PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00007.33 | ||||||||
Common Name | AMTR_s00007p00063550, LOC18433393 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | NAC | ||||||||
Protein Properties | Length: 362aa MW: 40744.6 Da PI: 6.9229 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 166.6 | 8.3e-52 | 11 | 138 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyat 70 lppGfrF+Ptdeel+v+yL++kv+++++++ + i+++d+yk++PwdLp+++ +e+ew+fFs+rd+ky++ evm_27.model.AmTr_v1.0_scaffold00007.33 11 LPPGFRFNPTDEELIVHYLQNKVTSRPMPV-SLIADIDLYKFDPWDLPSRALFGENEWFFFSPRDRKYPN 79 79****************************.89***************8777899*************** PP NAM 71 gkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 g r+nra++sgyWkatg+dk++l++ ++e g+kk Lvfykgr pkg ktdW+mheyrl evm_27.model.AmTr_v1.0_scaffold00007.33 80 GARPNRAAASGYWKATGTDKPILAScGNESLGVKKGLVFYKGRPPKGIKTDWIMHEYRL 138 ***********************9988889***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.11E-63 | 6 | 165 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.431 | 11 | 165 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.5E-26 | 12 | 138 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 362 aa Download sequence Send to blast |
MAGLSYLDQQ LPPGFRFNPT DEELIVHYLQ NKVTSRPMPV SLIADIDLYK FDPWDLPSRA 60 LFGENEWFFF SPRDRKYPNG ARPNRAAASG YWKATGTDKP ILASCGNESL GVKKGLVFYK 120 GRPPKGIKTD WIMHEYRLPD SLERPERRSG SMRLDDWVLC RVRHKFNAAK NIADDRDAMS 180 ADTLTGFYEV GEQQILQSKG PDLDVASNIF QSSFPALEYI LASVDPFDAC SNSSMSFQGS 240 STNSFLRGPS EPESPDKNVH SPHIHSPHIH SPHIHSPQIH SPHIHSPQIH SPLKRCIQNE 300 SRDGNVYPFS KKLNFSPDAG FGLARNDQQF CDQSSFHDQS ISNPILEFQQ LFGSMYTGNN 360 M* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-70 | 11 | 171 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-70 | 11 | 171 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-70 | 11 | 171 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-70 | 11 | 171 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-70 | 11 | 171 | 20 | 174 | NAC domain-containing protein 19 |
3swm_B | 2e-70 | 11 | 171 | 20 | 174 | NAC domain-containing protein 19 |
3swm_C | 2e-70 | 11 | 171 | 20 | 174 | NAC domain-containing protein 19 |
3swm_D | 2e-70 | 11 | 171 | 20 | 174 | NAC domain-containing protein 19 |
3swp_A | 2e-70 | 11 | 171 | 20 | 174 | NAC domain-containing protein 19 |
3swp_B | 2e-70 | 11 | 171 | 20 | 174 | NAC domain-containing protein 19 |
3swp_C | 2e-70 | 11 | 171 | 20 | 174 | NAC domain-containing protein 19 |
3swp_D | 2e-70 | 11 | 171 | 20 | 174 | NAC domain-containing protein 19 |
4dul_A | 1e-70 | 11 | 171 | 17 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-70 | 11 | 171 | 17 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006843547.1 | 0.0 | NAC domain-containing protein 67 | ||||
TrEMBL | W1P5U3 | 0.0 | W1P5U3_AMBTC; Uncharacterized protein | ||||
STRING | ERN05222 | 0.0 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69490.1 | 7e-84 | NAC-like, activated by AP3/PI |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00007.33 |
Entrez Gene | 18433393 |
Publications ? help Back to Top | |||
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