PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00007.27
Common NameAMTR_s00007p00053050, LOC18433386
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family ERF
Protein Properties Length: 330aa    MW: 36046 Da    PI: 9.1158
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00007.27genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.22.1e-1885134255
                                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                              +y+GVr+++ +g+WvAeIr+p++   r+r +lg+f taeeAa+a+++a+ +l+g
  evm_27.model.AmTr_v1.0_scaffold00007.27  85 RYRGVRQRS-WGKWVAEIREPRK---RTRKWLGTFSTAEEAARAYDRAAAALYG 134
                                              59****999.**********954...5**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.70885142IPR001471AP2/ERF domain
CDDcd000185.11E-1985120No hitNo description
PfamPF008471.3E-1285134IPR001471AP2/ERF domain
SMARTSM003804.7E-3685148IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-2085142IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.8E-2985142IPR001471AP2/ERF domain
PRINTSPR003679.0E-118697IPR001471AP2/ERF domain
PRINTSPR003679.0E-11108124IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006970Biological Processresponse to osmotic stress
GO:0009414Biological Processresponse to water deprivation
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0009744Biological Processresponse to sucrose
GO:0009749Biological Processresponse to glucose
GO:0010119Biological Processregulation of stomatal movement
GO:0010353Biological Processresponse to trehalose
GO:0010449Biological Processroot meristem growth
GO:0010896Biological Processregulation of triglyceride catabolic process
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:0032880Biological Processregulation of protein localization
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048316Biological Processseed development
GO:0048527Biological Processlateral root development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MTTALSLHRE NHPTSRHRRF TSFLCPLQMA SLSHQNQNQN QQHENPSPSS SPSSSHSSKS  60
SERNSSGEGR RKCKGKGGPD NNKFRYRGVR QRSWGKWVAE IREPRKRTRK WLGTFSTAEE  120
AARAYDRAAA ALYGARAQLN LEQPVASKLT APQSSAASLR PLLPRPTGFN TGFNHHINAY  180
PCSASTFSLL NNPTSSLGSC NQFPATVSQF PVPVSPYVDS TQQPLIHGFY DEIGGLAGSV  240
DASLSLSRVS DESLSHPRVS GAETQGYEVR NGGEREIPAV SMAVPPSPSS SLMWPPYEYE  300
QAAMLSALPP MDPNPSSLWE DGEPFMFDL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-1686141359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00674SELEXTransfer from GRMZM2G093595Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006843541.20.0ethylene-responsive transcription factor ABI4
TrEMBLW1PC930.0W1PC93_AMBTC; Uncharacterized protein
STRINGERN052160.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40220.15e-23ERF family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]