PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00004.258
Common NameAMTR_s00004p00261980
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family C3H
Protein Properties Length: 942aa    MW: 103971 Da    PI: 4.9272
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00004.258genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.15.5e-07332350625
                                               -SGGGGTS--TTTTT-SS-S CS
                                   zf-CCCH   6 CrffartGtCkyGdrCkFaH 25 
                                               C+ffar G+C  G++CkF H
  evm_27.model.AmTr_v1.0_scaffold00004.258 332 CDFFAR-GWCIKGSSCKFLH 350
                                               ******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902293.27E-6326351IPR000571Zinc finger, CCCH-type
SMARTSM003560.0082326352IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.713326353IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-5331350IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-4331354IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010220Biological Processpositive regulation of vernalization response
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 942 aa     Download sequence    Send to blast
MANETEEDRG PLLPRDAEMR RAAEELACEV SQRGIDCEDR ARFDKALNPA FAFLFDAPDP  60
NSDAAIASRY YSWLKKTYQC RSGEVSMDDH EEEGQEEELE EEEGEEEEEE LEEEGEELEE  120
EQGEEAEEED NASPSPAAES DAYHEVEVKG CEEVRKVAST DPSDKLQVKR NNTTCVTDQC  180
SDLLDLRQHG VYALEGNGIS EITSDKGKIS RSLAGKKRSF GDSSWNEQQD NKEAFKGTQV  240
LKDDNHDGVA GKSSFKSQEM ADSPTSSNDS DSDGVLYSKR DLKALHTKPN MGLSEDLKLE  300
CSSLHVPPQR LRSRSPDAEE FGGRNKRSPL VCDFFARGWC IKGSSCKFLH QKDDVNEASQ  360
VTKGKTIEAM SWRGDTSDGA GERRAVDTSK YSIFSEQLSS SQGVSLTHSL AERSQLLSPQ  420
GDNASTGTMF RKDYGSLTST YDGFHPLNFP GERSRFVSSN LEASRENPRQ DSFVDNFRPI  480
IFDMQDRHFP PISIGGDLQC YDRPSVVPSI HEKLGDNMYQ RIPKGEYNHN STFLSRYPSH  540
YVHGDFGRPD PSLNWNRSNP ASLLAGLSMP LVGDDGRYKP FKCEGNSLDL TIPKWSSRFS  600
MHDVPMPGLN SFLRTSFSSN ISYTNPAITG PGSSSTIGSP FSVFKLLDSP NIPNSKARSF  660
LPCSFSMTGK SPPYGLRPEG ETTSLQNIEQ ASPIPGGSRT YSYSNSRELS GSLRSSFSHT  720
MARFSSPSSQ YDPILDSIEP SGGEPHASFV ASSFSESKCT ESISQKLANG NRAMLESWSP  780
GYNAKTDMDS FYRVNGDRVD IQKAETAEET PLADAKGTTS EPKEDKKSNP NVAAAGHAEN  840
AGDSANAADG NRHDKDSKLL KCFRAALVDF VKELLKPFWR EGRLSKDAHK TVVKKAVEKV  900
LSAMHPNQIP GTTESINQYL STSRTKIRKL VEGYVAKYAK S*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011628978.20.0uncharacterized protein LOC18421386
TrEMBLW1NDL60.0W1NDL6_AMBTC; Uncharacterized protein
STRINGERM937420.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP728179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.11e-25C3H family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]