PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00001.280
Common NameAMTR_s00001p00242720, LOC18424335
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family NAC
Protein Properties Length: 268aa    MW: 30746.2 Da    PI: 8.2033
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00001.280genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM150.86.3e-4771333128
                                       NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatg 71 
                                               pGfrFhPt+ee++ +yLk+ + g++l++ ++i ++d+y+++Pw+Lp+ ++ +e+ewyfF++rd+k+++g
  evm_27.model.AmTr_v1.0_scaffold00001.280   7 PGFRFHPTEEEILGFYLKRVALGNSLQF-DIIGTLDLYRHDPWELPALANIGEREWYFFVPRDRKHPNG 74 
                                               9**************************9.99***************8888899**************** PP

                                       NAM  72 krknratksgyWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                                r+nr+tk+g+Wkatg+d+++ s    + + glkktLvfy+grapkg ktdWvm+eyrl
  evm_27.model.AmTr_v1.0_scaffold00001.280  75 GRPNRITKNGFWKATGSDRRIRSGsdPKCVLGLKKTLVFYTGRAPKGCKTDWVMNEYRL 133
                                               **********************964444559**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100553.5715152IPR003441NAC domain
SuperFamilySSF1019411.44E-556152IPR003441NAC domain
PfamPF023656.4E-247133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009965Biological Processleaf morphogenesis
GO:0010200Biological Processresponse to chitin
GO:0045792Biological Processnegative regulation of cell size
GO:0048281Biological Processinflorescence morphogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MAELELPGFR FHPTEEEILG FYLKRVALGN SLQFDIIGTL DLYRHDPWEL PALANIGERE  60
WYFFVPRDRK HPNGGRPNRI TKNGFWKATG SDRRIRSGSD PKCVLGLKKT LVFYTGRAPK  120
GCKTDWVMNE YRLLESYPVP KKDIVMCKIY RKVTSLKVLE QRAAMEKDKA TPPQSGCVTP  180
AHATPSPSYH EVDTENQANY ARMETSDVKE EAETASTTHE KQEERPRLAE LQMPKLCMDW  240
MHDPAFTQLR SPWGELLLTP YPSLLNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-51115512168NO APICAL MERISTEM PROTEIN
1ut4_B2e-51115512168NO APICAL MERISTEM PROTEIN
1ut7_A2e-51115512168NO APICAL MERISTEM PROTEIN
1ut7_B2e-51115512168NO APICAL MERISTEM PROTEIN
3swm_A3e-51115515171NAC domain-containing protein 19
3swm_B3e-51115515171NAC domain-containing protein 19
3swm_C3e-51115515171NAC domain-containing protein 19
3swm_D3e-51115515171NAC domain-containing protein 19
3swp_A3e-51115515171NAC domain-containing protein 19
3swp_B3e-51115515171NAC domain-containing protein 19
3swp_C3e-51115515171NAC domain-containing protein 19
3swp_D3e-51115515171NAC domain-containing protein 19
4dul_A2e-51115512168NAC domain-containing protein 19
4dul_B2e-51115512168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006828987.10.0NAC domain-containing protein 35
SwissprotQ10S654e-93NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBLW1NLJ20.0W1NLJ2_AMBTC; Uncharacterized protein
STRINGERM964030.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17040.13e-85NAC domain containing protein 36
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]
  2. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]