PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00001.233 | ||||||||
Common Name | AMTR_s00001p00223800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | SRS | ||||||||
Protein Properties | Length: 216aa MW: 22616.2 Da PI: 8.9625 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 113.9 | 2.2e-35 | 20 | 95 | 4 | 78 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaask 73 g+ +CqdCGnqakkdC+h+RCRtCCksrgf+C th+kstWvpa++rrerqqqlaa++++++++ ++++k evm_27.model.AmTr_v1.0_scaffold00001.233 20 GGNTCQDCGNQAKKDCVHQRCRTCCKSRGFECPTHIKSTWVPASRRRERQQQLAALHHHQQQQLvLHDKPK 90 5679****************************************************999988875666667 PP DUF702 74 rkrel 78 r r+ evm_27.model.AmTr_v1.0_scaffold00001.233 91 RVRQA 95 76654 PP | |||||||
2 | DUF702 | 71.3 | 2.9e-22 | 91 | 152 | 99 | 153 |
DUF702 99 eletss.....lPeevsseavfrcvrvssvdd..geeelaYqtavsigGhvfkGiLydqGle 153 + ++s lP+ev++ avfrcvrvssv++ +eee+aYqtav igG vfkG+Lyd+G++ evm_27.model.AmTr_v1.0_scaffold00001.233 91 RVRQASnlgpgLPSEVRTGAVFRCVRVSSVEEggDEEEYAYQTAVAIGGRVFKGVLYDRGPD 152 33333346777*********************745667**********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 5.9E-54 | 21 | 152 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 9.8E-28 | 23 | 65 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 5.2E-22 | 102 | 151 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048467 | Biological Process | gynoecium development |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MLGSGQGSEG RPSSGLVLGG GNTCQDCGNQ AKKDCVHQRC RTCCKSRGFE CPTHIKSTWV 60 PASRRRERQQ QLAALHHHQQ QQLVLHDKPK RVRQASNLGP GLPSEVRTGA VFRCVRVSSV 120 EEGGDEEEYA YQTAVAIGGR VFKGVLYDRG PDPAASGSGG GGGGASSSSL GEGGGGGVSS 180 SMLAASLLDP TAMFSHNPYL SAEFSFVPRR NSSRL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK102444 | 2e-34 | AK102444.1 Oryza sativa Japonica Group cDNA clone:J033093N15, full insert sequence. | |||
GenBank | AP003683 | 2e-34 | AP003683.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0431G06. | |||
GenBank | AP004368 | 2e-34 | AP004368.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1139B11. | |||
GenBank | AP014957 | 2e-34 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012609 | 2e-34 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011629082.1 | 1e-145 | protein SHI RELATED SEQUENCE 1 | ||||
Swissprot | Q9LQZ5 | 7e-53 | SRS5_ARATH; Protein SHI RELATED SEQUENCE 5 | ||||
TrEMBL | W1NLI7 | 1e-155 | W1NLI7_AMBTC; Uncharacterized protein | ||||
STRING | ERM96356 | 1e-155 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP1872 | 11 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75520.1 | 7e-37 | SHI-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00001.233 |
Publications ? help Back to Top | |||
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