PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT33502 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | WRKY | ||||||||
Protein Properties | Length: 256aa MW: 29363.6 Da PI: 6.3108 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 70.7 | 2.1e-22 | 57 | 117 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnhe 59 Dg+ WrKYGqK++k+s fpr YYrC+++ +C + k v+++ +edp ++++tY+ eH+++ EMT33502 57 DGHLWRKYGQKNIKDSAFPRLYYRCSYRedrQCLASKLVQQEnHEDPPLFKVTYTYEHTCN 117 9**************************99999*******9752689*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF118290 | 3.01E-21 | 49 | 118 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 2.3E-22 | 50 | 117 | IPR003657 | WRKY domain |
SMART | SM00774 | 9.1E-33 | 55 | 118 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.3E-23 | 57 | 116 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 16.191 | 57 | 119 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MDMAWFLLAW RWMLTLYYQI CTGKLEYDIR TFVIIHNYKV WKDRPSWIKH TFTPHFDGHL 60 WRKYGQKNIK DSAFPRLYYR CSYREDRQCL ASKLVQQENH EDPPLFKVTY TYEHTCNTAP 120 VPTPDVVAEL PAPATGDALL LRFDSTGAGH RGAHRMEQER HYQQPAAPGS GWPSMMLSFD 180 SNNRQHEQCT FPSELPPAAS SSSFSTEGLP APSSTTDGGD DGFSTWDSLR YGLNDHVHFG 240 DHSYLPNSGN DGDDNY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 9e-14 | 57 | 116 | 10 | 68 | OsWRKY45 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020186009.1 | 1e-161 | probable WRKY transcription factor 46 | ||||
TrEMBL | N1R5C6 | 0.0 | N1R5C6_AEGTA; Putative WRKY transcription factor 46 | ||||
STRING | EMT33502 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11529 | 24 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46400.1 | 2e-17 | WRKY DNA-binding protein 46 |