PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT32999 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | NAC | ||||||||
Protein Properties | Length: 303aa MW: 32476 Da PI: 11.1937 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 101.5 | 1.2e-31 | 19 | 154 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWk.atgkdkevlsk... 95 lppGfrF+Ptdeelvv+yL++k+ + +l++ vi++v ++y+++Pwd+p a+e e y+F+ r + a kr r +t+sg Wk a+ ++++v+++ EMT32999 19 LPPGFRFRPTDEELVVQYLRRKALALPLPA-AVISDVhNLYSLDPWDIP---GAREGEKYYFAVRPAAGA--KRGGRtTTASGCWKpASARERPVVVSrcg 113 79****************************.89999999**********...345678999999988765..577775788*****777789999998898 PP NAM 96 kgelvglkktLvfy........kgrapkgektdWvmheyrl 128 +++lvg+kk+L+f ++ p + +t Wvmheyrl EMT32999 114 RSHLVGVKKSLAFVprrgkgkgSKAPPASAQTGWVMHEYRL 154 8999**********9988664434566778*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.19E-38 | 17 | 182 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 41.364 | 19 | 182 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.9E-21 | 20 | 154 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MERTPVMVRQ GGQEVLRQLP PGFRFRPTDE ELVVQYLRRK ALALPLPAAV ISDVHNLYSL 60 DPWDIPGARE GEKYYFAVRP AAGAKRGGRT TTASGCWKPA SARERPVVVS RCGRSHLVGV 120 KKSLAFVPRR GKGKGSKAPP ASAQTGWVMH EYRLALPHHH KNGCCLAEAG TEEWVVCRIF 180 QRDRSSSSSN RQTPGIQGTD AHHTMPPSPS SSSSSSCVTS GGGSPDMQEE CRPPRGRHGM 240 SQLPPSPPPA LTSPSAAAGD RRQGKPTRVM VAAEGISSLP RIRGVRPSRL RGGGGLAVVH 300 VGA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 8e-25 | 19 | 186 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 8e-25 | 19 | 186 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 8e-25 | 19 | 186 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 8e-25 | 19 | 186 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-24 | 19 | 186 | 20 | 172 | NAC domain-containing protein 19 |
3swm_B | 1e-24 | 19 | 186 | 20 | 172 | NAC domain-containing protein 19 |
3swm_C | 1e-24 | 19 | 186 | 20 | 172 | NAC domain-containing protein 19 |
3swm_D | 1e-24 | 19 | 186 | 20 | 172 | NAC domain-containing protein 19 |
3swp_A | 1e-24 | 19 | 186 | 20 | 172 | NAC domain-containing protein 19 |
3swp_B | 1e-24 | 19 | 186 | 20 | 172 | NAC domain-containing protein 19 |
3swp_C | 1e-24 | 19 | 186 | 20 | 172 | NAC domain-containing protein 19 |
3swp_D | 1e-24 | 19 | 186 | 20 | 172 | NAC domain-containing protein 19 |
4dul_A | 8e-25 | 19 | 186 | 17 | 169 | NAC domain-containing protein 19 |
4dul_B | 8e-25 | 19 | 186 | 17 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020151744.1 | 1e-168 | NAC domain-containing protein 83-like | ||||
TrEMBL | M8CEY4 | 0.0 | M8CEY4_AEGTA; NAC domain-containing protein 18 | ||||
STRING | EMT32999 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11818 | 31 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13180.1 | 2e-30 | NAC domain containing protein 83 |