PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT32911

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

GRAS

Protein Properties

Length: 581aa MW: 64719.6 Da PI: 5.1513

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT32911	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	271.5	2.7e-83	264	579	2	317
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaI 102 ++lL++cAeav s+d + a++lL+r++ ++sp+gd+ qRla+yft++L+arla+++s+ly++l ++ts + e + a++l +s +k++ l ++I EMT32911 264 ETLLTRCAEAVVSNDVRGASKLLERIKCHSSPTGDARQRLAHYFTQGLEARLAGTGSRLYRSLMGKRTS---VLELIRAFHLHEAASCSIKVGLLFSTNTI 361 689**********************************************************999999...9************************ PP GRAS 103 leavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEa 201 ++av+g +++Hi+ +++s G+QWp Ll+ La+R++gpp++RiTg++ p +g ++e g+rL++ A+++gvpf+f++ +a++ ed++ eeL+++p+E+ EMT32911 362 YKAVAGRRKLHIVHYGMSTGFQWPDLLRLLANREGGPPEVRITGINTPLPGpcPDALMQEAGHRLNNCASQFGVPFKFRA-IASKPEDVRAEELHIDPDEV 461 ********************************************9999899999******************.79************** PP GRAS 202 laVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvac 300 l+V++ ++ +l+des++ + +rd vL+++++++P v++ + + ++++ F++rf +al+y++alfd +e+++pr+ er vEr +l+r++ n++ac EMT32911 462 LVVSSLYEFRTLMDESLTFDMvsPRDMVLNTIRKMRPSVFISSVVNGPYSAAFFMTRFRHALYYFTALFDVMETTVPRDGGERLLVERDILARSAINMIAC 562 ***********98765555************************************************************************** PP GRAS 301 egaerrerhetlekWre 317 eg++r+er +++++W++ EMT32911 563 EGTDRVERPQNYKEWQD 579 *************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	52.332	237	581	IPR005202	Transcription factor GRAS
Pfam	PF03514	9.4E-81	264	579	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 581 aa Download sequence Send to blast
MAATPEELLG LAEPAPLSPS VFLDLPPTTH GDSQNDLALE YISRMLTEED IVDKFFYQYP 60 DHPKLLQAEQ PFAEILADTS SSAAQESFAS STSILMPSQG NNTDVMVSGC QVQDPVFLNG 120 TGTVEPNGMV FPSESSTSMN MLSSMEFFKG MEEANMFLPT YDVMVDGRGR KKRSVMDGEA 180 EAGLGRSSKQ IVVLLHSTTT LEEEEATALE MLDRLILNGY EACPSEMQEV VRVTWEDKED 240 KAARQSISRR GRRGARHTVV TDLETLLTRC AEAVVSNDVR GASKLLERIK CHSSPTGDAR 300 QRLAHYFTQG LEARLAGTGS RLYRSLMGKR TSVLELIRAF HLHEAASCSI KVGLLFSTNT 360 IYKAVAGRRK LHIVHYGMST GFQWPDLLRL LANREGGPPE VRITGINTPL PGPCPDALMQ 420 EAGHRLNNCA SQFGVPFKFR AIASKPEDVR AEELHIDPDE VLVVSSLYEF RTLMDESLTF 480 DMVSPRDMVL NTIRKMRPSV FISSVVNGPY SAAFFMTRFR HALYYFTALF DVMETTVPRD 540 GGERLLVERD ILARSAINMI ACEGTDRVER PQNYKEWQDD Q

Sequence ? help Back to Top

Protein Sequence Length: 581 aa Download sequence Send to blast

MAATPEELLG LAEPAPLSPS VFLDLPPTTH GDSQNDLALE YISRMLTEED IVDKFFYQYP  60
DHPKLLQAEQ PFAEILADTS SSAAQESFAS STSILMPSQG NNTDVMVSGC QVQDPVFLNG  120
TGTVEPNGMV FPSESSTSMN MLSSMEFFKG MEEANMFLPT YDVMVDGRGR KKRSVMDGEA  180
EAGLGRSSKQ IVVLLHSTTT LEEEEATALE MLDRLILNGY EACPSEMQEV VRVTWEDKED  240
KAARQSISRR GRRGARHTVV TDLETLLTRC AEAVVSNDVR GASKLLERIK CHSSPTGDAR  300
QRLAHYFTQG LEARLAGTGS RLYRSLMGKR TSVLELIRAF HLHEAASCSI KVGLLFSTNT  360
IYKAVAGRRK LHIVHYGMST GFQWPDLLRL LANREGGPPE VRITGINTPL PGPCPDALMQ  420
EAGHRLNNCA SQFGVPFKFR AIASKPEDVR AEELHIDPDE VLVVSSLYEF RTLMDESLTF  480
DMVSPRDMVL NTIRKMRPSV FISSVVNGPY SAAFFMTRFR HALYYFTALF DVMETTVPRD  540
GGERLLVERD ILARSAINMI ACEGTDRVER PQNYKEWQDD Q

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	4e-39	269	567	25	311	Protein SCARECROW
5b3h_A	4e-39	269	567	24	310	Protein SCARECROW
5b3h_D	4e-39	269	567	24	310	Protein SCARECROW
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020162691.1	0.0	scarecrow-like protein 33
TrEMBL	M8D8R5	0.0	M8D8R5_AEGTA; Uncharacterized protein
STRING	EMT32911	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP231	31	297

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29060.1	7e-95	GRAS family protein