PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT32612 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 129aa MW: 14697.1 Da PI: 10.1851 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 79 | 3.3e-25 | 10 | 57 | 2 | 50 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 rien s+r vtfskRr+g+lKKA EL +LCd+ev vi+fs tg+lyey+ EMT32612 10 RIENMSRRPVTFSKRRHGLLKKARELAILCDVEVGVIVFS-TGHLYEYA 57 8**************************************8.7******8 PP | |||||||
2 | K-box | 32.3 | 4.3e-12 | 74 | 128 | 12 | 70 |
K-box 12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKn 70 ++++s q++++ L+ + ++ + +Ge L++L + ++ +e+qLeksl +iR+kK+ EMT32612 74 QNYQSAQEQHQLLNPVSQVMEAN----MGERLSNLAVTNICLMENQLEKSLHRIREKKE 128 78999*****************9....******************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 25.048 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.2E-31 | 1 | 59 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.09E-23 | 3 | 90 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.8E-19 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.7E-23 | 10 | 56 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.8E-19 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.8E-19 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 4.1E-6 | 95 | 128 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 129 aa Download sequence Send to blast |
MVRGKIVIRR IENMSRRPVT FSKRRHGLLK KARELAILCD VEVGVIVFST GHLYEYANST 60 AATSMGTTMP SIIQNYQSAQ EQHQLLNPVS QVMEANMGER LSNLAVTNIC LMENQLEKSL 120 HRIREKKEI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020153605.1 | 1e-89 | MADS-box transcription factor 25-like | ||||
Swissprot | Q84NC5 | 4e-35 | MAD25_ORYSJ; MADS-box transcription factor 25 | ||||
TrEMBL | M8CY23 | 4e-90 | M8CY23_AEGTA; MADS-box transcription factor 25 | ||||
STRING | EMT32612 | 6e-91 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP129 | 38 | 398 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37940.1 | 3e-35 | AGAMOUS-like 21 |
Publications ? help Back to Top | |||
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