PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT32582 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | ERF | ||||||||
Protein Properties | Length: 166aa MW: 17150.4 Da PI: 11.3567 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.4 | 3.5e-18 | 47 | 92 | 3 | 52 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52 y+GVr + +g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++aa++ EMT32582 47 YRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDAAALV 92 9****998.**********843...6*********************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.0E-12 | 45 | 92 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.4E-35 | 46 | 109 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.037 | 46 | 103 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-31 | 46 | 104 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.5E-21 | 46 | 104 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.9E-10 | 47 | 58 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.76E-19 | 47 | 105 | No hit | No description |
PRINTS | PR00367 | 1.9E-10 | 69 | 85 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 166 aa Download sequence Send to blast |
MPDSELNSPA SSSASPPPSP TTARGGVLEK RGRDAGGNGA GDRHPAYRGV RMRAWGKWVS 60 EIREPRKKSR IWLGTFPTPE MAARAHDAAA LVVKGPAAVL NFPELASSLP RPASAAPHDV 120 QAAAARAAAM DPAPVSAGVS TEPMPAAATS PPVAPRTDVE PGRRRA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 6e-22 | 34 | 103 | 2 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003682 | 9e-79 | AP003682.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0427B07. | |||
GenBank | AP014962 | 9e-79 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020193635.1 | 2e-99 | ethylene-responsive transcription factor ERF039-like | ||||
Swissprot | Q9LYD3 | 6e-50 | DREB3_ARATH; Dehydration-responsive element-binding protein 3 | ||||
TrEMBL | M8CXZ6 | 1e-110 | M8CXZ6_AEGTA; Dehydration-responsive element-binding protein 3 | ||||
STRING | EMT32582 | 1e-111 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP159 | 35 | 354 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11590.1 | 7e-27 | ERF family protein |
Publications ? help Back to Top | |||
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