PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT32482 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 86aa MW: 9889.5 Da PI: 11.8187 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 29.2 | 1.2e-09 | 20 | 50 | 4 | 34 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-E CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdae 34 + r+v fskR++g++ KA+E L++a+ EMT32482 20 IKEDARYVCFSKRKQGLFNKASEQALLTGAQ 50 556789**********************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 0.0048 | 9 | 66 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 12.278 | 9 | 50 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.11E-9 | 10 | 51 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.5E-10 | 18 | 50 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 86 aa Download sequence Send to blast |
MVAKRKGGNG RKKTVPRRII KEDARYVCFS KRKQGLFNKA SEQALLTGAQ TLRRQHGEMR 60 TELVERKKRK KSVNEALPQE HATGTR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 66 | 70 | KKRKK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 3e-49 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020172838.1 | 2e-22 | agamous-like MADS-box protein AGL29 | ||||
TrEMBL | M8CXQ4 | 3e-55 | M8CXQ4_AEGTA; Uncharacterized protein | ||||
STRING | EMT32482 | 5e-56 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1224 | 36 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72350.1 | 1e-06 | M-type_MADS family protein |