PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT32428 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | ERF | ||||||||
Protein Properties | Length: 213aa MW: 23127.5 Da PI: 9.6758 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51 | 3.5e-16 | 34 | 85 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr++ grWv+e+r+ g + r +lg+f tae+Aa+a++aa ++l g EMT32428 34 LYRGVRQRGPAGRWVCEVRVL---GmRGSRLWLGTFVTAEMAARAHDAAVLALSG 85 69***************9994...6555*********************999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 6.43E-22 | 33 | 95 | No hit | No description |
Pfam | PF00847 | 1.6E-10 | 33 | 84 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.8E-28 | 34 | 95 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.51E-18 | 34 | 95 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 19.809 | 34 | 93 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.6E-22 | 34 | 99 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-5 | 35 | 46 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-5 | 59 | 75 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MPSGQQEQRH RTVRSEPPKR PAGRTKFHET RHPLYRGVRQ RGPAGRWVCE VRVLGMRGSR 60 LWLGTFVTAE MAARAHDAAV LALSGRKACL NFADSAWRML PVLAAGSFGF GSAREIKTAV 120 AVAVLAFQRQ KIVLPVACPA AEPAVVPKSG ALFSMSSGDL LELDDEQWFG GMVAGSYYES 180 LAQGMLVEPP DAGAWREQSE HSGVAETQTP LWG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. Confers resistance to high salt, cold and drought stress (By similarity). {ECO:0000250}. | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. Confers resistance to high salt, cold and drought stress. {ECO:0000269|PubMed:16284406}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00557 | DAP | Transfer from AT5G51990 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold stress. {ECO:0000269|PubMed:12609047}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN987212 | 0.0 | JN987212.1 Triticum aestivum AP2 domain CBF protein (CBFIVd) mRNA, CBFIVd-26.1 allele, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020167743.1 | 1e-154 | dehydration-responsive element-binding protein 1B-like | ||||
Swissprot | Q3T5N4 | 6e-51 | DRE1B_ORYSJ; Dehydration-responsive element-binding protein 1B | ||||
Swissprot | Q8GUW4 | 8e-51 | DRE1B_ORYSI; Dehydration-responsive element-binding protein 1B | ||||
TrEMBL | A0A453LD24 | 1e-153 | A0A453LD24_AEGTS; Uncharacterized protein | ||||
TrEMBL | K9M7H3 | 1e-153 | K9M7H3_WHEAT; AP2 domain CBF protein | ||||
TrEMBL | M8CE13 | 1e-153 | M8CE13_AEGTA; Dehydration-responsive element-binding protein 1B | ||||
STRING | EMT32428 | 1e-154 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP196 | 36 | 261 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25470.1 | 6e-35 | C-repeat/DRE binding factor 2 |