PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT32040
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family B3
Protein Properties Length: 648aa    MW: 71430.3 Da    PI: 9.3615
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT32040genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.95.7e-1649133999
               HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
        B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
               + +  + lv+p  f++++ggk    +t++le+++g++++v +  + + +r++l++GW +Fv+an+++e+ +++F++ ++ +f  +v++f++
  EMT32040  49 NGNFMHSLVIPEWFVNQFGGKI--WRTVKLESPNGNVYDVGV--TENMNRTILKSGWASFVDANKIEENYSLMFRYLENARF--KVTIFDS 133
               4555678***********9995..559***************..*******************************9987777..9999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.32341134IPR003340B3 DNA binding domain
CDDcd100179.87E-1743132No hitNo description
SMARTSM010197.7E-1044134IPR003340B3 DNA binding domain
SuperFamilySSF1019363.53E-1844138IPR015300DNA-binding pseudobarrel domain
PfamPF023623.3E-1447133IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.0E-1848135IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.8E-11255351IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.04E-10256350IPR015300DNA-binding pseudobarrel domain
CDDcd100171.39E-8260351No hitNo description
SMARTSM010190.027262356IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 648 aa     Download sequence    Send to blast
MPGADKTGRE RHHVRGQRKT TVEATQDIIK MSNPCECCQI KLKFLRKING NFMHSLVIPE  60
WFVNQFGGKI WRTVKLESPN GNVYDVGVTE NMNRTILKSG WASFVDANKI EENYSLMFRY  120
LENARFKVTI FDSSGKQKAS CCARMGTAGP DVRNPSTFDV ENSSSSCGGT TQSSPSERSD  180
SDGSQKESLY GYKKSAKKAA ISDSSEELSA EDSVSRGNLV DSYGVQVHLN DYVLSGKCDL  240
TVAQEAKIQA LVEKIRSEIP VLVVQMKKTS ANFGNLIIRK DYALKYFPCE ATNIILQLPR  300
KNKEWKCRFN PDRHNLYLGY FVRENCVQEG DICLFQPIAK AKERRFTVTV HLLHKESVRR  360
SPGGTAGMTH TATDRRTGAK TSLTARVKEE PATDGEDMSS LGPKEDGDNS EGAPETPFVL  420
PDRASITPAQ EQKVWEKVEA IESTVPVYVA ILNKCNVARK SGMMINMGKQ YASRYLEKQY  480
ITGHHGKKNV ISLVLQREGK SRTWDTELRR GTVLGQTRSG DKRRMPSGDT NAGRTSLSLS  540
PARTEAAARG LWGYCKQLGF VTSIVVLAML EGHTPLLAMQ RVCCEQHGQR CLEVVMSHTA  600
ASTGVGGNAT TVDATTMSSF VGDVEKAGVA TPTQKHVAMS GIVASKKC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198702.10.0B3 domain-containing protein Os03g0619600-like
TrEMBLM8C4040.0M8C404_AEGTA; B3 domain-containing protein
STRINGEMT320400.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-10B3 family protein