PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT31996 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | C2H2 | ||||||||
Protein Properties | Length: 133aa MW: 14568.7 Da PI: 9.9282 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.9 | 0.00016 | 41 | 63 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg+sF + L H +H EMT31996 41 FVCKTCGRSFASFQALGGHRTSH 63 89*********999998888777 PP | |||||||
2 | zf-C2H2 | 17.8 | 9.5e-06 | 95 | 117 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg+ F + L H+r+H EMT31996 95 HQCHICGQGFETGQALGGHMRRH 117 79********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 5.01E-8 | 40 | 63 | No hit | No description |
PROSITE profile | PS50157 | 11.302 | 41 | 68 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.6E-10 | 41 | 64 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.16 | 41 | 63 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 43 | 63 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 5.01E-8 | 90 | 117 | No hit | No description |
Pfam | PF13912 | 9.8E-11 | 94 | 120 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.015 | 95 | 117 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.388 | 95 | 122 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 97 | 117 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 133 aa Download sequence Send to blast |
MTKHQRAEAA DQHVVSLALS LCLGAVADRS KKMRRAGRDQ FVCKTCGRSF ASFQALGGHR 60 TSHLRDRNGL ALALTTGDQY CSVKPKSATD QKQAHQCHIC GQGFETGQAL GGHMRRHREE 120 VAQALPVLLE LFV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in oxidative stress response. {ECO:0000269|PubMed:14722088}. | |||||
UniProt | Probable transcription factor that may be involved in stress responses. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:16244149}. | |||||
UniProt | INDUCTION: By H(2)O(2), heat stress, wounding and cucumber mosaic virus (CMV). {ECO:0000269|PubMed:14722088, ECO:0000269|PubMed:18922600}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK365482 | 6e-98 | AK365482.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2034I15. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020198427.1 | 2e-93 | zinc finger protein ZAT8-like | ||||
Swissprot | Q42453 | 6e-18 | ZAT7_ARATH; Zinc finger protein ZAT7 | ||||
Swissprot | Q681X4 | 1e-17 | ZAT5_ARATH; Zinc finger protein ZAT5 | ||||
TrEMBL | A0A3B6N0M8 | 5e-92 | A0A3B6N0M8_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A453M9R9 | 5e-92 | A0A453M9R9_AEGTS; Uncharacterized protein | ||||
TrEMBL | M8D6E7 | 5e-92 | M8D6E7_AEGTA; Zinc finger protein 1 | ||||
STRING | EMT31996 | 8e-93 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1305 | 30 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46090.1 | 3e-20 | C2H2 family protein |
Publications ? help Back to Top | |||
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