PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT31994 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | C2H2 | ||||||||
Protein Properties | Length: 170aa MW: 18246.8 Da PI: 10.2533 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.6 | 0.00086 | 57 | 79 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg+ F + L H +H EMT31994 57 FVCKTCGRAFASFQALGGHRTSH 79 89*********999998888777 PP | |||||||
2 | zf-C2H2 | 14.4 | 0.00011 | 107 | 129 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F+ L H+r+H EMT31994 107 HECHICGLGFKMGQALGGHMRRH 129 79********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 8.49E-9 | 57 | 129 | No hit | No description |
SMART | SM00355 | 0.34 | 57 | 79 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 8.2E-10 | 57 | 81 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.658 | 57 | 84 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 59 | 79 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 8.8E-4 | 104 | 131 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.27 | 107 | 129 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.536 | 107 | 134 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 2.5E-10 | 107 | 132 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 109 | 129 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence Send to blast |
MGAGMKRARE EEPTVPLALS LSTDSASSSV TSADSGAAGP AKRRRGVVVA TSGEGEFVCK 60 TCGRAFASFQ ALGGHRTSHL RGRHGLELGV GVARAIKERK KRDEKQHECH ICGLGFKMGQ 120 ALGGHMRRHR EEIALRSADD RWVALLPDQK VEGQQAAADR PPPVLLELFV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK355632 | 6e-80 | AK355632.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1023K12. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020198429.1 | 1e-120 | zinc finger protein ZAT12-like | ||||
TrEMBL | M8CC79 | 1e-118 | M8CC79_AEGTA; Uncharacterized protein | ||||
STRING | EMT31994 | 1e-119 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1305 | 30 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59820.1 | 1e-20 | C2H2 family protein |