PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT31882
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family M-type_MADS
Protein Properties Length: 202aa    MW: 23107.5 Da    PI: 7.9941
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT31882genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF21.82.4e-071249340
              --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
    SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40
              i +  +r+ t  k +  +  KA+EL +LCd++ +++ +
  EMT31882 12 IADAAKRKATMRKGLLMLANKAQELAILCDIQTCLLWY 49
              55667777888777777889***************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004320.0026261IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-12278IPR002100Transcription factor, MADS-box
PROSITE profilePS5006611.325247IPR002100Transcription factor, MADS-box
PfamPF003199.4E-61249IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MAHRGKAKIQ WIADAAKRKA TMRKGLLMLA NKAQELAILC DIQTCLLWYL PGEAQMEVLW  60
PSLKEAKEIL QWYDERLESK NSKNKKEDTS FIQEIFNKGK ETFLEVQWQN CDLGIKDVLS  120
DLFVSDHRGL DDMPDHMSLV LKWRVKKYLM DVNTRLEKLR SGSAHALHLS QQQSLDTGYA  180
ATSYCIGEHH SSAAKDRGDV NG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020148965.11e-149uncharacterized protein LOC109734159
TrEMBLM8CW501e-148M8CW50_AEGTA; Agamous-like MADS-box protein AGL80
STRINGEMT318821e-149(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.17e-13AGAMOUS-like 80