PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT31843 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | C2H2 | ||||||||
Protein Properties | Length: 81aa MW: 8594.39 Da PI: 7.5155 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.3 | 5.7e-05 | 24 | 46 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ F++ L H+++H EMT31843 24 HECSFCNRGFTNAQALGGHMNVH 46 79*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.65E-7 | 22 | 51 | No hit | No description |
Pfam | PF13912 | 1.4E-6 | 23 | 48 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 7.6E-5 | 24 | 50 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0098 | 24 | 46 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.51 | 24 | 51 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 26 | 46 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 81 aa Download sequence Send to blast |
MEGGGSGKVG SPEDAAARRA REYHECSFCN RGFTNAQALG GHMNVHRDER RRQAAAPPAD 60 GGGSQKKGPG SSEELDLELR L |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020160069.1 | 7e-24 | transcriptional regulator TAC1-like | ||||
TrEMBL | A0A3B6TE96 | 2e-51 | A0A3B6TE96_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A453QUJ3 | 2e-51 | A0A453QUJ3_AEGTS; Uncharacterized protein | ||||
TrEMBL | M8CCH9 | 2e-51 | M8CCH9_AEGTA; Uncharacterized protein | ||||
STRING | EMT31843 | 3e-52 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6363 | 32 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43540.1 | 1e-12 | C2H2 family protein |