PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT30077
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family HB-other
Protein Properties Length: 472aa    MW: 50332 Da    PI: 5.0636
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT30077genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox31.92.3e-102263256
              HHHHHCTS-HHHHHHHHHHHHHHHH CS
  Homeobox 32 eLAkklgLterqVkvWFqNrRakek 56
              eL+++l+L+ rqVk+WFqNrR+++k
  EMT30077  2 ELSRRLNLESRQVKFWFQNRRTQMK 26
              89********************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.4E-9135IPR009057Homeodomain-like
PROSITE profilePS5007112.276128IPR001356Homeobox domain
CDDcd000865.04E-7228No hitNo description
SuperFamilySSF466898.13E-8232IPR009057Homeodomain-like
PfamPF000469.6E-8226IPR001356Homeobox domain
PROSITE patternPS000270326IPR017970Homeobox, conserved site
SuperFamilySSF559618.42E-12287395No hitNo description
SuperFamilySSF559618.42E-12422462No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MELSRRLNLE SRQVKFWFQN RRTQMKTQIE RHENALLRQE NDKLRTENMT IREAMRSPTC  60
GNCGGAAVLG EVSLEEQHLR IENSRLKDEL DRVCALAGKF LGRPVSAISS PLSLPSSLCS  120
GLDLAVGSNN GFMGMGMQSI PDLMVGGSAA MRRPTGIMGG GLDDGLGGEG VAIDRGALLE  180
LGLAAMEELG KVTQVDDPLW QPSLDIGLET LNFDEYRRAF ARVLGPSPAG YVSEATREVG  240
IAIINSVDLV NSLMNEVRIA VNMDTSGASC RNTRANRCNA AGSVVGDVPR VFDYLRDEQR  300
RGEWDILANG EAMQEMDHIA KGQHHGNAVS LLRPNATSGN QNNMLILQET CTDASGSLVV  360
YAPVDVQSMH VVMGGGDSAY VSLLPSGFAI LPDGHTPPPA ATDPSPQGSS PNAHGGSSNN  420
SPGSLVTVAF QILVNNLPTA KLTVESVDTV SNLLSCTIQK IKSALQASII SP
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3657940.0AK365794.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2037M19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020163109.11e-149homeobox-leucine zipper protein ROC6-like isoform X1
RefseqXP_020163116.11e-149homeobox-leucine zipper protein ROC6-like isoform X2
SwissprotQ7Y0V71e-102ROC6_ORYSJ; Homeobox-leucine zipper protein ROC6
TrEMBLM8CR910.0M8CR91_AEGTA; Homeobox-leucine zipper protein ROC6
STRINGEMT300770.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP120337116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.24e-65HD-ZIP family protein