PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT29816 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | NAC | ||||||||
Protein Properties | Length: 300aa MW: 33590.4 Da PI: 4.804 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 59.5 | 1.1e-18 | 27 | 76 | 1 | 51 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkv 51 l pG+rFhPtdeelv++yL++kv+gk+l++ evi+e+diyk++PwdLpk++ EMT29816 27 LLPGYRFHPTDEELVTFYLRRKVAGKPLSI-EVIREMDIYKHDPWDLPKAL 76 579***************************.99**************9643 PP | |||||||
2 | NAM | 31.6 | 4.8e-10 | 93 | 125 | 96 | 128 |
NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 +g l+glkk+Lv+y g+ kg+ktdW+mhe+r+ EMT29816 93 SGVLIGLKKSLVYYLGKFGKGTKTDWMMHEFRI 125 56779**************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-34 | 26 | 152 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 18.228 | 27 | 153 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.9E-15 | 29 | 125 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 300 aa Download sequence Send to blast |
MEMGKLISEE KVVLGGAGDE EEEDDVLLPG YRFHPTDEEL VTFYLRRKVA GKPLSIEVIR 60 EMDIYKHDPW DLPKALSGRP IYSAASGGSG SASGVLIGLK KSLVYYLGKF GKGTKTDWMM 120 HEFRIPPSAA AAANASQSTQ EAEVWTICRI FRRTITYRKQ QTWRTAPKPS AADQSSNTGS 180 FESSEVGHEY MNCLQAPAPT APCIPQQQHQ QYVSQMDAVN SNNFFYEDTM HNQQFQGQWN 240 AAPAAPEPEE KRQNTPSTAV SFHQTDHSHA VAEIDFYEVE GYLEEIARMM EVTDTAGFYD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-28 | 27 | 159 | 15 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020164300.1 | 0.0 | transcription factor JUNGBRUNNEN 1-like | ||||
TrEMBL | M8D0X3 | 0.0 | M8D0X3_AEGTA; NAC domain-containing protein 42 | ||||
STRING | EMT29816 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1191 | 38 | 129 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43000.1 | 3e-40 | NAC domain containing protein 42 |