PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT29502
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family C2H2
Protein Properties Length: 552aa    MW: 56528.6 Da    PI: 6.199
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT29502genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.0005389106219
               EETTTTEEESSHHHHHHH CS
   zf-C2H2   2 kCpdCgksFsrksnLkrH 19 
               +C++Cgk Fs+ +++  H
  EMT29502  89 VCKNCGKEFSSMELFLEH 106
               7*************9999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.961436IPR015880Zinc finger, C2H2-like
SuperFamilySSF576677.76E-61436No hitNo description
PROSITE profilePS501579.6811441IPR007087Zinc finger, C2H2
PfamPF139120.00251536IPR007087Zinc finger, C2H2
PROSITE patternPS0002801636IPR007087Zinc finger, C2H2
SuperFamilySSF576677.76E-683106No hitNo description
PROSITE profilePS501579.07888115IPR007087Zinc finger, C2H2
SuperFamilySSF576672.04E-7250273No hitNo description
SMARTSM003550.13251273IPR015880Zinc finger, C2H2-like
PfamPF139123.8E-9251275IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.221251278IPR007087Zinc finger, C2H2
PROSITE patternPS000280253273IPR007087Zinc finger, C2H2
SuperFamilySSF576672.04E-7368395No hitNo description
PROSITE profilePS501579.037373395IPR007087Zinc finger, C2H2
SMARTSM003553.8373395IPR015880Zinc finger, C2H2-like
PfamPF139124.3E-11373396IPR007087Zinc finger, C2H2
PROSITE patternPS000280375395IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 552 aa     Download sequence    Send to blast
MPPRPQPPPA AYKHFCRVCN KGFTCGSALG GHMRAHAVAD DGPGADDDDD DPGSSARGGE  60
DRPSTAGAAT THVYALRANP NRLTRGCQVC KNCGKEFSSM ELFLEHGKCT SGEEEDSDGS  120
PPPSVAGEEE DASLASGWSK GKRSRRAKSI AGGGDDTMPG PSTAPSGEDE EEDLANCLVM  180
LSSSKADQAS AAAEADPEPC APASKEHGRR PHQQPQHFPI VVATPDQAIM LPLALPAPQP  240
QYASPLPRGL FECKACKKVF TSHQALGGHR ASHKKVKGCF AAKPESSVGG TPHHHAAAAG  300
PSDEKGDAAA VDVIHASGSV DARTNADAST GGDTNAGTSG ATPSLSMAIT TTDHEPPVAG  360
LAIAPFKKKA KMHECSVCHR LFASGQALGG HKRCHWLTSG TGDHANITSL TAEGLVAAAG  420
HQLTLRPMMD PPEPALDLTI AANPLPLMAS ATVAEAGTSS LHLDASPSLY LQPAAAPSNP  480
SHQNKMTATS SHNANDAATP REAAEDEADS TAVKKAKLSD LKDVSAAGET TPWLQVGIGS  540
SSAGGDGKSA CE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3762540.0AK376254.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3119D16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020194231.10.0uncharacterized protein LOC109780050
TrEMBLA0A3B6DHZ50.0A0A3B6DHZ5_WHEAT; Uncharacterized protein
TrEMBLM8CPQ20.0M8CPQ2_AEGTA; Uncharacterized protein
STRINGEMT295020.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35243262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19580.28e-14zinc-finger protein 2