PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT29460 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | MYB | ||||||||
Protein Properties | Length: 314aa MW: 34784.2 Da PI: 7.802 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.5 | 2e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd lv ++q+G +W + ++ g+ R++k+c++rw +yl EMT29460 14 RGPWTVEEDMTLVAHIEQHGHSNWGALPKQAGLLRCAKSCRLRWINYL 61 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 53.8 | 4.3e-17 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T eE++ +++++++lG++ W+tIa++++ gRt++++k+ w+++l EMT29460 67 RGNFTSEEEDAIIQLHAMLGNR-WSTIAARLP-GRTDNEIKNVWHTHL 112 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.0E-22 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 12.138 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.68E-29 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.8E-10 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-13 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.80E-10 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 24.497 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.3E-26 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-14 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.3E-15 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.54E-10 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 314 aa Download sequence Send to blast |
MVRAPCCEKT GLKRGPWTVE EDMTLVAHIE QHGHSNWGAL PKQAGLLRCA KSCRLRWINY 60 LCPDIKRGNF TSEEEDAIIQ LHAMLGNRWS TIAARLPGRT DNEIKNVWHT HLKKRLDSSL 120 SKTSGQAAPK RKAKKPDVAA STLEDPTSDP VSPEQSLSTS SATDYSMASS LENTGSSSDE 180 FQIDDSFWSE TLAMSVDCSG SGMETSDTVA ADSASPSSSN DEMDFWVTLF MQDGKQTSQQ 240 LFPALKPSQK SSWARLKRQQ KRSDMMKSLS NMKRPKRTQQ SPGLVGRMLG GMAQDPHVQE 300 LILKGCVWFG NEVE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-25 | 12 | 118 | 5 | 110 | B-MYB |
1h8a_C | 2e-25 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 255 | 261 | LKRQQKR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of cold tolerance. Negatively regulates beta-amylase genes at the transcriptional level in response to cold stress. Suppresses beta-amylase gene expression by interacting with TIFY11A/JAZ9. Maltose produced by beta-amylases has a role in protecting cell membranes under cold stress conditions in rice and may contribute to the cold tolerance as a compatible solute. {ECO:0000269|PubMed:28062835}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by cold stress and flooding. {ECO:0000269|PubMed:28062835}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU011687 | 0.0 | GU011687.1 Leymus multicaulis MYB1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020182109.1 | 1e-174 | myb-related protein Myb4-like | ||||
Swissprot | Q6K1S6 | 3e-94 | MYB30_ORYSJ; Transcription factor MYB30 | ||||
TrEMBL | M8BWQ9 | 0.0 | M8BWQ9_AEGTA; Myb-related protein Myb4 | ||||
STRING | EMT29460 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP79 | 38 | 563 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23250.1 | 6e-73 | myb domain protein 15 |
Publications ? help Back to Top | |||
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