PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT29238 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | WRKY | ||||||||
Protein Properties | Length: 178aa MW: 18857.6 Da PI: 10.7276 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 99.9 | 1.6e-31 | 88 | 145 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YY+C++ gCp++k+ver+ +dp ++++tYegeH+h+ EMT29238 88 DEYSWRKYGQKPIKGSPYPRGYYKCSTVrGCPARKHVERALDDPAMLVVTYEGEHRHS 145 9************************9888****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 4.9E-15 | 42 | 84 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 2.1E-32 | 74 | 145 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.125 | 81 | 147 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.11E-26 | 84 | 145 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.6E-37 | 86 | 146 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.2E-26 | 88 | 144 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005516 | Molecular Function | calmodulin binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
MSGATSVTST SFFSSVTAGE GSVSKGRSLV SAGKPPLSGH KRKPCAGAHS EANTTGSRVH 60 CSKRRKNRVK TTVRVPAVSA KIADIPPDEY SWRKYGQKPI KGSPYPRGYY KCSTVRGCPA 120 RKHVERALDD PAMLVVTYEG EHRHSPGPMP MQMAPSPMPM PMGAPVAVAS VSAGNGHV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 3e-22 | 74 | 145 | 2 | 72 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Regulates rhizobacterium B.cereus AR156-induced systemic resistance (ISR) to P.syringae pv. tomato DC3000, probably by activating the jasmonic acid (JA)- signaling pathway (PubMed:26433201). {ECO:0000250, ECO:0000269|PubMed:26433201}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00464 | DAP | Transfer from AT4G31550 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Strongly during leaf senescence (PubMed:11722756). Repressed by rhizobacterium B.cereus AR156 in leaves, and to a lower extent, by P.fluorescens WCS417r (PubMed:26433201). {ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:26433201}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KR827404 | 0.0 | KR827404.1 Triticum aestivum WRKY53 transcriptional factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020163114.1 | 1e-125 | probable WRKY transcription factor 17 | ||||
Swissprot | Q9SV15 | 7e-65 | WRK11_ARATH; Probable WRKY transcription factor 11 | ||||
TrEMBL | A0A446MNB2 | 1e-125 | A0A446MNB2_TRITD; Uncharacterized protein | ||||
TrEMBL | M8C5B5 | 1e-125 | M8C5B5_AEGTA; Putative WRKY transcription factor 11 | ||||
STRING | EMT29238 | 1e-126 | (Aegilops tauschii) | ||||
STRING | Traes_2BL_6B75B32E3.1 | 1e-125 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP617 | 38 | 171 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31550.1 | 4e-52 | WRKY DNA-binding protein 11 |