PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | EMT28859 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 358aa MW: 38151.6 Da PI: 6.608 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 165.1 | 2.4e-51 | 11 | 138 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelv 100 lppGfrFhPtdeel+ +yL+++++++++++ +i++vdiyk++PwdLp+++ ++ ewyfFs+rd+ky++g r+nra+ sgyWkatg+dk+++++ g+ v EMT28859 11 LPPGFRFHPTDEELILHYLRNRAAATPCPV-PIIADVDIYKFDPWDLPSQAVYGDCEWYFFSPRDRKYPNGIRPNRAAGSGYWKATGTDKPIHAAaPGHGV 110 79****************************.88***************76667789*************************************9877888* PP NAM 101 glkktLvfykgrapkgektdWvmheyrl 128 g+kk Lvfykgr pkg+kt W+mheyrl EMT28859 111 GVKKALVFYKGRPPKGTKTAWIMHEYRL 138 **************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.88E-63 | 8 | 178 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.711 | 11 | 178 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.8E-27 | 12 | 138 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 358 aa Download sequence Send to blast |
MAQGQGAATS LPPGFRFHPT DEELILHYLR NRAAATPCPV PIIADVDIYK FDPWDLPSQA 60 VYGDCEWYFF SPRDRKYPNG IRPNRAAGSG YWKATGTDKP IHAAAPGHGV GVKKALVFYK 120 GRPPKGTKTA WIMHEYRLAA DPLAAALVAA IDSSSSVAFD KDRHGALDDW VLCRIYKKTG 180 LASPMVPPLS DYDHMADHDD LSGGGSTFDD AACSFYAHSS SSSSACGTMI TQQQPHAGRL 240 PTIPSFSELF DDYSLAQILD AEAEHGATHH LAVHPSLNQL LPVGDSAHGV QPSYYAPSSS 300 SPDGSGGSAG KRKAASPEES SAKRLNGSCF DAPPQSATGW QAAASVLGGL SHQMLPQF |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 4e-67 | 10 | 178 | 19 | 168 | NAC domain-containing protein 19 |
3swm_B | 4e-67 | 10 | 178 | 19 | 168 | NAC domain-containing protein 19 |
3swm_C | 4e-67 | 10 | 178 | 19 | 168 | NAC domain-containing protein 19 |
3swm_D | 4e-67 | 10 | 178 | 19 | 168 | NAC domain-containing protein 19 |
3swp_A | 4e-67 | 10 | 178 | 19 | 168 | NAC domain-containing protein 19 |
3swp_B | 4e-67 | 10 | 178 | 19 | 168 | NAC domain-containing protein 19 |
3swp_C | 4e-67 | 10 | 178 | 19 | 168 | NAC domain-containing protein 19 |
3swp_D | 4e-67 | 10 | 178 | 19 | 168 | NAC domain-containing protein 19 |
3ulx_A | 3e-67 | 7 | 180 | 11 | 170 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor of the NAC family associated with male fertility. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KT783450 | 0.0 | KT783450.1 Triticum aestivum NAC transcription factor 29 (NAC29) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020161118.1 | 0.0 | protein ATAF2-like | ||||
Swissprot | A2YMR0 | 1e-77 | NAC10_ORYSI; NAC transcription factor ONAC010 | ||||
TrEMBL | M8C3N6 | 0.0 | M8C3N6_AEGTA; NAC domain-containing protein 29 | ||||
STRING | EMT28859 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1237 | 36 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G69490.1 | 2e-77 | NAC-like, activated by AP3/PI |