PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT28627 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 189aa MW: 21395.6 Da PI: 10.2968 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 51.2 | 1.5e-16 | 11 | 51 | 3 | 43 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 i n s r vtf kRrn ++KKA EL ++C+++++v+++++ EMT28627 11 IHNRSTRRVTFKKRRNSMMKKAGELGTMCNTKACVLVYGEG 51 89************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.1E-15 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 16.792 | 1 | 50 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.7E-9 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 9.29E-21 | 4 | 95 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.46E-20 | 4 | 82 | No hit | No description |
Pfam | PF00319 | 5.3E-15 | 11 | 52 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.7E-9 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.7E-9 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MAHKKVALRY IHNRSTRRVT FKKRRNSMMK KAGELGTMCN TKACVLVYGE GSSVPHVFPS 60 HADAVAILNR YKDMPDLVQF KNTVSQEEFL IERITKLQEE ANRFRRERED REIRILLHKA 120 MLGGSLDVHE LTLVGPKLEV ILKNLGERIA ISQNLEPTGL PTTSSIGHQR HRDGASDDVS 180 SASTAELHR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020186941.1 | 1e-136 | agamous-like MADS-box protein AGL80 | ||||
TrEMBL | M8CME3 | 1e-137 | M8CME3_AEGTA; Agamous-like MADS-box protein AGL80 | ||||
STRING | EMT28627 | 1e-138 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP363 | 36 | 202 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 2e-19 | AGAMOUS-like 80 |