PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT27416
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family M-type_MADS
Protein Properties Length: 250aa    MW: 27580.1 Da    PI: 8.9471
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT27416genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF34.42.9e-111147340
              --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
    SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40
              i n+++r  t+  Rrn + KKA EL +LC+++++++++
  EMT27416 11 IGNSTQRR-TYVTRRNNLVKKAGELGILCNTKICMLVY 47
              56777776.8**************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.4E-11159IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.32E-15181IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.101149IPR002100Transcription factor, MADS-box
PfamPF003192.3E-81749IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MARKKVPLRY IGNSTQRRTY VTRRNNLVKK AGELGILCNT KICMLVYDEG AAAPDVYPSH  60
TEAVAILNRY KNMPDIARFK KEIRKSLAER IANTSGQPPV FQPQAPYVTG GVDMGPPSTD  120
QGPPQQEGWQ PEVFQQAQAP QVTSNVDMGY LPTYQVPPQQ QQGWRPQVFR PQAPYVTGNV  180
DMGPPQMYHV PLQQHGWQPP TFQRSEGDGA LLYNANNGTG GHDGAGTSSS AGFPMDDLMQ  240
FFNNMGSGLQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020170132.16e-48agamous-like MADS-box protein AGL80
TrEMBLM8CUE20.0M8CUE2_AEGTA; Agamous-like MADS-box protein AGL36
STRINGEMT274160.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28700.14e-13AGAMOUS-like 46