PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT25749 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | NAC | ||||||||
Protein Properties | Length: 329aa MW: 35503.9 Da PI: 7.8923 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 174.5 | 3.1e-54 | 13 | 138 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvg 101 lppGfrFhPtdeel+++yL+kkv++ ++ + +++ +d++k+ePwdLp+ ++ +ekewyfF+ +d+ky+tg r+nrat+sgyWkatgkdk++++ +++lvg EMT25749 13 LPPGFRFHPTDEELITHYLAKKVADARFAA-LAVSVADLNKCEPWDLPSLARMGEKEWYFFCLKDRKYPTGLRTNRATESGYWKATGKDKDIFR-GKALVG 111 79*************************999.569999***********8778899***************************************.99**** PP NAM 102 lkktLvfykgrapkgektdWvmheyrl 128 +kktLvfy+grapkg k+ Wvmheyrl EMT25749 112 MKKTLVFYTGRAPKGDKSGWVMHEYRL 138 *************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.81E-63 | 8 | 172 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.964 | 13 | 172 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.7E-30 | 14 | 138 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MEHSEQEQHA MDLPPGFRFH PTDEELITHY LAKKVADARF AALAVSVADL NKCEPWDLPS 60 LARMGEKEWY FFCLKDRKYP TGLRTNRATE SGYWKATGKD KDIFRGKALV GMKKTLVFYT 120 GRAPKGDKSG WVMHEYRLNA KLHAASTSRG SLSGGRAASS RNEWVLCRVF KKSLVGGVVS 180 SAPASSAAKK SGVEMIEEIG SSVAAVTPLP ALLDMSGSGA SFDPAAHVTC FSNNALEAGQ 240 FFNPTVTGGC ATDTDNHGLA SSYSPLASFT QYGGQLHHGV SLSLQPAACK GERERLSASQ 300 DTGLTSDVNP EISSSFGQKF DHEPAPWGY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-52 | 11 | 173 | 15 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-52 | 11 | 173 | 15 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-52 | 11 | 173 | 15 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-52 | 11 | 173 | 15 | 166 | NO APICAL MERISTEM PROTEIN |
4dul_A | 3e-52 | 11 | 173 | 15 | 166 | NAC domain-containing protein 19 |
4dul_B | 3e-52 | 11 | 173 | 15 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP093111 | 1e-167 | FP093111.1 Phyllostachys edulis cDNA clone: bphyem126o09, full insert sequence. | |||
GenBank | FP097753 | 1e-167 | FP097753.1 Phyllostachys edulis cDNA clone: bphyem208n21, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020168413.1 | 0.0 | NAC domain-containing protein 92-like | ||||
TrEMBL | M8BUZ8 | 0.0 | M8BUZ8_AEGTA; Protein CUP-SHAPED COTYLEDON 2 | ||||
STRING | EMT25749 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2730 | 37 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61430.1 | 9e-89 | NAC domain containing protein 100 |