PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT25326
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family B3
Protein Properties Length: 296aa    MW: 32800.8 Da    PI: 9.6621
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT25326genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B367.51.9e-2119118199
               EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
               ffkvl     +k+ rl +p kf++++        +g ke s+  tle +sgr+W+v +  r++ +++++t+GW +Fv+++ L+e +f+vF++dg ++f   
  EMT25326  19 FFKVL--IGDFKK-RLKIPPKFCKHIpweasrkaKGLKEASMAATLEGPSGRTWQVVI--RRTAEGTFFTAGWAKFVQDQALRELEFLVFRHDGGTSF--A 112
               66666..555555.6********888********6666799*****************..*******************************9987777..7 PP

               EEEE-S CS
        B3  94 vkvfrk 99 
                +vf+k
  EMT25326 113 AMVFDK 118
               777766 PP
2B3474.8e-152092821898
               --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
        B3  18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
               +p  f ++h   ++e+++++l+d++g+ W   +i   + +   l++GW  F++ n L+egD +vF+l g  ef  +v++fr
  EMT25326 209 FPTGFSRQHL--PREKTEMVLRDPDGKAWAALYI--PSTRD-RLSRGWCAFARGNCLEEGDCCVFELAGAAEF--RVHIFR 282
               5788888884..346679***************4..44333.49**********************9987777..999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-2113121IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-2015123IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.71716119IPR003340B3 DNA binding domain
CDDcd100171.95E-1917117No hitNo description
SMARTSM010193.3E-1119119IPR003340B3 DNA binding domain
PfamPF023621.8E-1819117IPR003340B3 DNA binding domain
SMARTSM010190.0029203284IPR003340B3 DNA binding domain
SuperFamilySSF1019363.73E-19208282IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.0E-18208282IPR015300DNA-binding pseudobarrel domain
CDDcd100176.74E-19208282No hitNo description
PROSITE profilePS5086312.731209284IPR003340B3 DNA binding domain
PfamPF023622.5E-13209282IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MPAAEGQSPL ASAERRPHFF KVLIGDFKKR LKIPPKFCKH IPWEASRKAK GLKEASMAAT  60
LEGPSGRTWQ VVIRRTAEGT FFTAGWAKFV QDQALRELEF LVFRHDGGTS FAAMVFDKSA  120
CEREDLLLAG DAPRPRRKRG RPRTASRAVD DSAGMELVPY QLPQVACSDR MPELDKSNDA  180
MAMCSVQHNA CNGLAGSAGP PSPMKAERFP TGFSRQHLPR EKTEMVLRDP DGKAWAALYI  240
PSTRDRLSRG WCAFARGNCL EEGDCCVFEL AGAAEFRVHI FRVVEPAVPA VRLRLA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1133137RPRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020157089.11e-117B3 domain-containing protein Os01g0723500-like
SwissprotQ8S2E62e-72Y1235_ORYSJ; B3 domain-containing protein Os01g0723500
TrEMBLM8CP430.0M8CP43_AEGTA; B3 domain-containing protein
STRINGEMT253260.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127923135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.11e-18B3 family protein