PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | EMT25287 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 260aa MW: 29325.9 Da PI: 8.6096 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 38.3 | 3.1e-12 | 97 | 141 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 WT eE+ ++ + + +G g+Wk I++++ +++t+ q+ s+ qky EMT25287 97 FWTDEEHRSFLYGLEVYGRGDWKNISKHFVTTKTPVQVSSHAQKY 141 6*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.653 | 90 | 146 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.22E-16 | 94 | 147 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-8 | 94 | 144 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.6E-9 | 96 | 148 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 6.8E-9 | 98 | 141 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.99E-9 | 98 | 142 | No hit | No description |
TIGRFAMs | TIGR01557 | 4.3E-14 | 98 | 144 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 260 aa Download sequence Send to blast |
MEVNQGWTSS EVEEACSLIA RLKTNKIMYD DNDDKNKKHN YIVNSLHALF PSKTMKQNTG 60 ITVTGEAPLM ADNNKMKMLE NNISIDQPVV APHQWGFWTD EEHRSFLYGL EVYGRGDWKN 120 ISKHFVTTKT PVQVSSHAQK YFKRIEKKAS SRTKRYSIND VRLHDNELLA ANNSSAPGQT 180 LSFTSLNNDP SFRLQAPTSS FTVMNNLAQC SPSIYNQQVG QQPMWREQQM MGSTAPVMGG 240 VGNYVPDGQQ GSAYFYLANV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020169890.1 | 1e-122 | uncharacterized protein LOC109755392 | ||||
TrEMBL | M8CDV0 | 0.0 | M8CDV0_AEGTA; Myb-like protein J | ||||
STRING | EMT25287 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP842 | 30 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G10580.2 | 2e-22 | MYB_related family protein |