PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT24618 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | NAC | ||||||||
Protein Properties | Length: 388aa MW: 42022.6 Da PI: 9.1991 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 173.2 | 7.5e-54 | 18 | 149 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kge 98 lppGfrFhPtdeel+++yL +kv + ++ +++i+e+d++k+ePw+Lp k + ++ ekewyf+s rd+ky+tg r+nrat +gyWkatgkd+e+ s+ +g+ EMT24618 18 LPPGFRFHPTDEELITYYLLRKVVDCGFSGARAIAEIDLNKCEPWELPdKaCKTTAEKEWYFYSLRDRKYPTGLRTNRATGAGYWKATGKDREIRSArNGA 118 79***************************9999**************96534445788*************************************987889 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrle 129 lvg+kktLvfy+grapkg+kt+Wvmhe+rle EMT24618 119 LVGMKKTLVFYRGRAPKGQKTQWVMHEFRLE 149 9***************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.62E-56 | 17 | 158 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.408 | 18 | 200 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.8E-27 | 19 | 148 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 5.62E-56 | 188 | 200 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 388 aa Download sequence Send to blast |
MERYGSLGMR LDGGGGDLPP GFRFHPTDEE LITYYLLRKV VDCGFSGARA IAEIDLNKCE 60 PWELPDKACK TTAEKEWYFY SLRDRKYPTG LRTNRATGAG YWKATGKDRE IRSARNGALV 120 GMKKTLVFYR GRAPKGQKTQ WVMHEFRLEG VYAYHFLPNN TTRSWLRARR IRAKLVTSRV 180 ELLEQQALYD EWVIAKIFVK PGAVPPSRKV RYGLSSAGDT SCFSDSTSVS IGGGGGASAS 240 SAPRQQLPDT SSLLAAAHAA ADGESSSYGA AANNNAAGNC RELVPCFSTA HMDATLLGIG 300 QYEPATLAVE QPLAFFHGSR LVQAADNLSL PMFLPGGLQS GVSPLGMGGG AFQHWPSSGY 360 DMKLEGSRAP PQMAVGPGQL DGAYGWGF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-46 | 18 | 148 | 17 | 142 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-46 | 18 | 148 | 17 | 142 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-46 | 18 | 148 | 17 | 142 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-46 | 18 | 148 | 17 | 142 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-46 | 18 | 148 | 20 | 145 | NAC domain-containing protein 19 |
3swm_B | 2e-46 | 18 | 148 | 20 | 145 | NAC domain-containing protein 19 |
3swm_C | 2e-46 | 18 | 148 | 20 | 145 | NAC domain-containing protein 19 |
3swm_D | 2e-46 | 18 | 148 | 20 | 145 | NAC domain-containing protein 19 |
3swp_A | 2e-46 | 18 | 148 | 20 | 145 | NAC domain-containing protein 19 |
3swp_B | 2e-46 | 18 | 148 | 20 | 145 | NAC domain-containing protein 19 |
3swp_C | 2e-46 | 18 | 148 | 20 | 145 | NAC domain-containing protein 19 |
3swp_D | 2e-46 | 18 | 148 | 20 | 145 | NAC domain-containing protein 19 |
4dul_A | 1e-46 | 18 | 148 | 17 | 142 | NAC domain-containing protein 19 |
4dul_B | 1e-46 | 18 | 148 | 17 | 142 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator of STM and KNAT6. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for the fusion of septa of gynoecia along the length of the ovaries. Activates the shoot formation in callus in a STM-dependent manner. Controls leaf margin development and required for leaf serration. Involved in axillary meristem initiation and separation of the meristem from the main stem. Regulates the phyllotaxy throughout the plant development. Seems to act as an inhibitor of cell division. {ECO:0000269|PubMed:10079219, ECO:0000269|PubMed:10750709, ECO:0000269|PubMed:12163400, ECO:0000269|PubMed:12492830, ECO:0000269|PubMed:12610213, ECO:0000269|PubMed:15202996, ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:15500463, ECO:0000269|PubMed:15723790, ECO:0000269|PubMed:16798887, ECO:0000269|PubMed:17098808, ECO:0000269|PubMed:17122068, ECO:0000269|PubMed:17251269, ECO:0000269|PubMed:17287247, ECO:0000269|PubMed:9212461}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By BRM and SYD, at the chromatin level, and conferring a very specific spatial expression pattern. Precise spatial regulation by post-transcriptional repression directed by the microRNA miR164. {ECO:0000269|PubMed:15202996, ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:15723790, ECO:0000269|PubMed:16854978, ECO:0000269|PubMed:17251269, ECO:0000269|PubMed:17287247}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK372899 | 0.0 | AK372899.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3015H16. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020185936.1 | 0.0 | protein CUP-SHAPED COTYLEDON 1-like | ||||
Swissprot | O04017 | 1e-75 | NAC98_ARATH; Protein CUP-SHAPED COTYLEDON 2 | ||||
TrEMBL | M8BS28 | 0.0 | M8BS28_AEGTA; Protein CUP-SHAPED COTYLEDON 2 | ||||
STRING | EMT24618 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9940 | 35 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53950.1 | 2e-70 | NAC family protein |