PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT23900

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

ERF

Protein Properties

Length: 1443aa MW: 160365 Da PI: 6.8048

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT23900	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.3	6.9e-17	76	125	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr++ +g+WvAeIr+p + r r +lg+f ta eAa+a++ a+++++g EMT23900 76 AYRGVRQRT-WGKWVAEIREP---N-RgNRLWLGSFPTAVEAARAYDDAARAMYG 125 59**999.******8...2.359*********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00380	6.7E-35	76	139	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.57E-19	76	133	IPR016177	DNA-binding domain
Pfam	PF00847	9.5E-11	76	125	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	21.799	76	133	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.8E-8	77	88	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.2E-29	77	134	IPR001471	AP2/ERF domain
CDD	cd00018	4.22E-18	77	135	No hit	No description
PRINTS	PR00367	2.8E-8	99	115	IPR001471	AP2/ERF domain
SuperFamily	SSF52540	8.21E-9	471	623	IPR027417	P-loop containing nucleoside triphosphate hydrolase
Pfam	PF00176	2.0E-6	481	611	IPR000330	SNF2-related, N-terminal domain
SuperFamily	SSF52540	3.19E-17	649	887	IPR027417	P-loop containing nucleoside triphosphate hydrolase

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 1443 aa Download sequence Send to blast
METGGSKREG DCPGQERKKK VRRRSTGPDS VAETIKKWKE ENQKLQQENG SRKAPAKGSK 60 KGCMAGKGGP ENSNCAYRGV RQRTWGKWVA EIREPNRGNR LWLGSFPTAV EAARAYDDAA 120 RAMYGAKARV NFSEQSPDAN SGCTLAPPLP MSNGATAASH PSDGKDESES PPSLISNAPT 180 AALHRSDAKD ESESAGTVAR KVKKEVSNDL RSTHEEHKTL EVSQPKGKAL HKAANELGIA 240 LRVGIKLRHI RKSYFCRSYY ILNCCRKVQP HRLTDLCPQN RLAESSLAVE DRGQSTGHSR 300 RSGSSSLRSE PFPTIYSEQH KSMPGDGGPI SIQKEGPASR QLKVILSVIS PLYNQLTRWF 360 NVPPEPPNRK AEQNPAPKPS EQADNGHAGA QVDATSALTS QILKLDIKSR RTTNQSFRGV 420 KQCPVQKLQR LPDGCHPDFD NDHLYCVNKL LESWSKSHGS VLVDDKEHIL KTILFTMVVL 480 ADARQPFLIV TTTASLSLWE VQFNKLAPHI NVVVHDGRKD MLKSIQAQQF YENGSHITSQ 540 VLLSHPEAIL EDIEPIARIG WEAIIVDYYQ HLALKYLEQL KQLCTGFRVL LVSSPIEDIP 600 EYMNMLAFLK SGQKDNSGYV DTADALEMLK RRFAHHIAYE RKADSSKFLE HWVPAYISQV 660 QLGVYCSILL SNSSVLQSKK KANSVEALRD ILLSLSECCN HPYLRECLEA SPVNNPDMTE 720 TVDIGVHASG KLLLLDKMLK EISNRRLRVI VLFQSGGAGA NPMGDILEGV VCHRFGPESY 780 ERVKCGAVMS SKQAAIDMFN DKTKGRFVLL IESRACLPSI KLLSVDAVII YSSDWNPSND 840 LKALQRINIE SQLKYVSIFR LYTPFTVEEN NFLLAKQGRL IDSNIQDVMH SSSHSLLSWG 900 AQFLFTRFDE LLQDRYSSKH SERGTNFMDE VILEFLTKLP TNTEDSSKIN SVYISKANMS 960 GEFYSRSITV IGEKEGMSML DGDPSVFWLD LLDGKSPCWS YISELTQSIN RMLQNIEEPA 1020 QVAAEETDEA TNVSVTQQRE CHVSVTQQRE CHVSVDVFPN MAVERRIDLV DDVFPFGENN 1080 ILHKQQAEIS NLVTHSQNKQ ILRIGATQIC GSSMHMQQLR NLPAQQSLAT LPHPPAEAEP 1140 AGIPGMEAMT CLQSMQYQPT EAEWGGILGA LAAHGSQPEM QPSTSMQDVL FEKTDLSGMP 1200 LLGSMNARQS VEPSWDLHAG EEPACTLGMV TTDKLQSEIQ QSATVHDRPA EAEGTSTLGT 1260 RALQNLHPEM QSSTAMHHVP LERAHSEGRS QTGFQPNTSP GPEQLSQLLF FEEELNQVLS 1320 ASDQPLEDMS EMYKHHINLL REAHEQKKSQ LQIERYREIE KVNRKYYSLL QKEDPTLLHS 1380 QMGLVDSYKE ASVNKSPAQD FLGEVAPSSA AQGTSERPAM VLPPKSSPAQ TTASPGAPPY 1440 DHQ

Sequence ? help Back to Top

Protein Sequence Length: 1443 aa Download sequence Send to blast

METGGSKREG DCPGQERKKK VRRRSTGPDS VAETIKKWKE ENQKLQQENG SRKAPAKGSK  60
KGCMAGKGGP ENSNCAYRGV RQRTWGKWVA EIREPNRGNR LWLGSFPTAV EAARAYDDAA  120
RAMYGAKARV NFSEQSPDAN SGCTLAPPLP MSNGATAASH PSDGKDESES PPSLISNAPT  180
AALHRSDAKD ESESAGTVAR KVKKEVSNDL RSTHEEHKTL EVSQPKGKAL HKAANELGIA  240
LRVGIKLRHI RKSYFCRSYY ILNCCRKVQP HRLTDLCPQN RLAESSLAVE DRGQSTGHSR  300
RSGSSSLRSE PFPTIYSEQH KSMPGDGGPI SIQKEGPASR QLKVILSVIS PLYNQLTRWF  360
NVPPEPPNRK AEQNPAPKPS EQADNGHAGA QVDATSALTS QILKLDIKSR RTTNQSFRGV  420
KQCPVQKLQR LPDGCHPDFD NDHLYCVNKL LESWSKSHGS VLVDDKEHIL KTILFTMVVL  480
ADARQPFLIV TTTASLSLWE VQFNKLAPHI NVVVHDGRKD MLKSIQAQQF YENGSHITSQ  540
VLLSHPEAIL EDIEPIARIG WEAIIVDYYQ HLALKYLEQL KQLCTGFRVL LVSSPIEDIP  600
EYMNMLAFLK SGQKDNSGYV DTADALEMLK RRFAHHIAYE RKADSSKFLE HWVPAYISQV  660
QLGVYCSILL SNSSVLQSKK KANSVEALRD ILLSLSECCN HPYLRECLEA SPVNNPDMTE  720
TVDIGVHASG KLLLLDKMLK EISNRRLRVI VLFQSGGAGA NPMGDILEGV VCHRFGPESY  780
ERVKCGAVMS SKQAAIDMFN DKTKGRFVLL IESRACLPSI KLLSVDAVII YSSDWNPSND  840
LKALQRINIE SQLKYVSIFR LYTPFTVEEN NFLLAKQGRL IDSNIQDVMH SSSHSLLSWG  900
AQFLFTRFDE LLQDRYSSKH SERGTNFMDE VILEFLTKLP TNTEDSSKIN SVYISKANMS  960
GEFYSRSITV IGEKEGMSML DGDPSVFWLD LLDGKSPCWS YISELTQSIN RMLQNIEEPA  1020
QVAAEETDEA TNVSVTQQRE CHVSVTQQRE CHVSVDVFPN MAVERRIDLV DDVFPFGENN  1080
ILHKQQAEIS NLVTHSQNKQ ILRIGATQIC GSSMHMQQLR NLPAQQSLAT LPHPPAEAEP  1140
AGIPGMEAMT CLQSMQYQPT EAEWGGILGA LAAHGSQPEM QPSTSMQDVL FEKTDLSGMP  1200
LLGSMNARQS VEPSWDLHAG EEPACTLGMV TTDKLQSEIQ QSATVHDRPA EAEGTSTLGT  1260
RALQNLHPEM QSSTAMHHVP LERAHSEGRS QTGFQPNTSP GPEQLSQLLF FEEELNQVLS  1320
ASDQPLEDMS EMYKHHINLL REAHEQKKSQ LQIERYREIE KVNRKYYSLL QKEDPTLLHS  1380
QMGLVDSYKE ASVNKSPAQD FLGEVAPSSA AQGTSERPAM VLPPKSSPAQ TTASPGAPPY  1440
DHQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6ftx_W	3e-35	443	914	198	679	Chromatin-remodeling ATPase
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG670306	0.0	HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020182859.1	0.0	uncharacterized protein LOC109768534
TrEMBL	M8BG30	0.0	M8BG30_AEGTA; Dehydration-responsive element-binding protein 2A
STRING	EMT23900	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1652	3	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40350.1	1e-31	ERF family protein