PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT22922 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | NAC | ||||||||
Protein Properties | Length: 215aa MW: 24489 Da PI: 4.4874 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 57.9 | 3.6e-18 | 30 | 78 | 2 | 51 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkv 51 pG+rFhPtdeelv +yL++k+++k+l++ evi+e+diyk++PwdLp+ v EMT22922 30 LPGYRFHPTDEELVAFYLRRKMARKSLRI-EVIREMDIYKHDPWDLPRGV 78 69***************************.99**************9633 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.8E-18 | 28 | 77 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 14.285 | 29 | 188 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.2E-9 | 31 | 152 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MELEMEKATR DGELVLGGAG DEEEEEDVVL PGYRFHPTDE ELVAFYLRRK MARKSLRIEV 60 IREMDIYKHD PWDLPRGVDH LQDLQEGHHL PEPAAAVEAG ARAVLRRFEL QQGGLPGHQQ 120 QYVSRTGTVD SGNFFYEDNM HNQQFQGQWN AAPAAPVPEQ KQQNPLSTAV DFHQNDNSHA 180 VAANDFYKVE GYLEEIARML EVADPAGFYD YRSYG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 6e-12 | 22 | 75 | 8 | 61 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK374728 | 8e-86 | AK374728.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3074N05. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020195560.1 | 2e-65 | transcription factor JUNGBRUNNEN 1-like | ||||
TrEMBL | M8C7C4 | 1e-157 | M8C7C4_AEGTA; Putative NAC domain-containing protein 9 | ||||
STRING | EMT22922 | 1e-158 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1191 | 38 | 129 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43000.1 | 3e-19 | NAC domain containing protein 42 |