PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT22867
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family M-type_MADS
Protein Properties Length: 396aa    MW: 43765.1 Da    PI: 8.7732
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT22867genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF32.88.8e-111350542
              SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
    SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
              +k  r  t  kR +g+ KKAeEL ++C a+++v+++++
  EMT22867 13 DKKSRCSTSKKRCEGLRKKAEELAIMCKAKACVLVYGE 50
              6777888889**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554558.76E-16180IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.886150IPR002100Transcription factor, MADS-box
SMARTSM004322.3E-10160IPR002100Transcription factor, MADS-box
CDDcd002661.12E-16261No hitNo description
PfamPF003195.8E-111150IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MARKKVALRY ILDKKSRCST SKKRCEGLRK KAEELAIMCK AKACVLVYGE GEAAPQVFPS  60
PAEAVPVLNR YKNMPGGNFK KTVNHEGFLN QHFDKLRAKC HKLQGVCEDN ETRILLHKAM  120
LRSNLSSLDG LNIEDLTNVG RKLEVILQSM GESITKISGQ PPVFQPQEPY VTNTMDMGSP  180
AMYHAPLPAP YVTDYMHTES SSTYHAPPPA PYITHNMDMG SSMMYPAAAT VPYVTSGMDM  240
GPPTMFKAPP QRQEDSLDMM RYGGDLNALV YSGHNSSGRN DTNTSTIFPS SDIHPKRSFE  300
VGFGWQFGGT DPEASSSSPF PQITLPKKSV RHSETTGKAY PTRNAKGAME NEVLNGLFNN  360
ITWDVASNSK HVILPCFTNC KWACLKHGEG IYLVKC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020184638.10.0uncharacterized protein LOC109770348
TrEMBLM8C7770.0M8C777_AEGTA; MADS-box transcription factor PHERES 2
STRINGEMT228670.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28700.11e-15AGAMOUS-like 46