PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT22755

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

Trihelix

Protein Properties

Length: 369aa MW: 41606.7 Da PI: 7.7733

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT22755	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	70.8	2.6e-22	44	98	2	56
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwen 56 W ++e+l Li++rrem+++++++k++k+lWe++s+kmre+gf rsp++C++kw+n EMT22755 44 WVQDETLSLIALRREMDNHFNTSKSNKHLWEAISAKMREQGFDRSPTMCTDKWRN 98 *****************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.689	36	100	IPR017877	Myb-like domain
SMART	SM00717	0.0021	40	102	IPR001005	SANT/Myb domain
CDD	cd12203	3.25E-26	42	98	No hit	No description
Pfam	PF13837	6.4E-13	43	98	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0042802	Molecular Function	identical protein binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence Send to blast
MLLAGPQPPT PPLLLPESSG EDGGAHDHDS SSRASAPKKR AETWVQDETL SLIALRREMD 60 NHFNTSKSNK HLWEAISAKM REQGFDRSPT MCTDKWRNRQ IPTRFVHHHR PVKIARNYLK 120 IATRRGITVS AAAKSPTPTS KIESYLQFAD KAYGFMFTDI NLGFEDANIP FGPVEASHPL 180 ALTTADAVAT NGVNPWNWRD TSTNGGDNQG TYGGRVILVK WGDYTKRIGI DGTAEAIKEA 240 IKSAFGLRTR RAFWLEDEDE VVRSLDRDMP VGVYALHLDN GSGYRRLSIQ SHPQMFISGI 300 TIKLCTFEDA DRMTVRTEDK TFYTEDDFRD FLSRRGWTLL REYSGYRVAD TLDDLRPGAI 360 YQGMRSLVD

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence Send to blast

MLLAGPQPPT PPLLLPESSG EDGGAHDHDS SSRASAPKKR AETWVQDETL SLIALRREMD  60
NHFNTSKSNK HLWEAISAKM REQGFDRSPT MCTDKWRNRQ IPTRFVHHHR PVKIARNYLK  120
IATRRGITVS AAAKSPTPTS KIESYLQFAD KAYGFMFTDI NLGFEDANIP FGPVEASHPL  180
ALTTADAVAT NGVNPWNWRD TSTNGGDNQG TYGGRVILVK WGDYTKRIGI DGTAEAIKEA  240
IKSAFGLRTR RAFWLEDEDE VVRSLDRDMP VGVYALHLDN GSGYRRLSIQ SHPQMFISGI  300
TIKLCTFEDA DRMTVRTEDK TFYTEDDFRD FLSRRGWTLL REYSGYRVAD TLDDLRPGAI  360
YQGMRSLVD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2jmw_A	4e-30	38	109	1	72	DNA binding protein GT-1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269\|PubMed:10437822, ECO:0000269\|PubMed:15044016, ECO:0000269\|PubMed:7866025}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00004	PBM	Transfer from 920224	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JF951956	0.0	JF951956.1 Aegilops tauschii clone TaMYB36 MYB-related protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020195254.1	0.0	trihelix transcription factor GT-4-like
Swissprot	Q9FX53	1e-119	TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBL	M8BD08	0.0	M8BD08_AEGTA; Uncharacterized protein
STRING	EMT22755	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5631	37	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	1e-113	Trihelix family protein

Publications ? help Back to Top
Le Gourrierec J,Li YF,Zhou DX Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex. Plant J., 1999. 18(6): p. 663-8 [PMID:10417717]