PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT22193 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | NAC | ||||||||
Protein Properties | Length: 362aa MW: 40321.8 Da PI: 9.7243 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 167.2 | 5.6e-52 | 13 | 142 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.leleev.ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 lppGfrFhP+d+el+++yL++kv+gk ++ + + +vd++kvePwdLp +++ + kewyf+s +d+kyatg+r+nrat sgyWkatgkd+ v + +g+l EMT22193 13 LPPGFRFHPRDDELICDYLAPKVTGKVgFSGRRPpLVDVDLNKVEPWDLPVTASVGGKEWYFYSLKDRKYATGQRTNRATVSGYWKATGKDRVVAR-RGAL 112 79************************986665656***************8888899***********************************9999.999* PP NAM 100 vglkktLvfykgrapkgektdWvmheyrle 129 vg++ktLvfy+grapkg+kt+Wvmheyrle EMT22193 113 VGMRKTLVFYQGRAPKGRKTEWVMHEYRLE 142 ****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.15E-54 | 2 | 147 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 50.996 | 13 | 221 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.7E-26 | 14 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 362 aa Download sequence Send to blast |
MSMSFLSMVE TELPPGFRFH PRDDELICDY LAPKVTGKVG FSGRRPPLVD VDLNKVEPWD 60 LPVTASVGGK EWYFYSLKDR KYATGQRTNR ATVSGYWKAT GKDRVVARRG ALVGMRKTLV 120 FYQGRAPKGR KTEWVMHEYR LEGAHEQASK SHLQEEIRSW CHPQAKEPHQ HRPWHIHRHL 180 LTTTAASHGH HPSTAPGHHE HLRRRRTCQQ EDWVLCRVIC KKKSGVGATP RPRNLTNIVH 240 GTSTDTSSPP LPPLMDTTLA QLQATMNTSA AAALEQVPCF SSFSNNSASN SSYLPMVTGN 300 SNGMSYLDHG LPDFGSYLDP ALNCDKKVLK AVLSQLSSMG GEVVPSMSPQ MAAAVSSTWN 360 HF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 6e-45 | 9 | 141 | 11 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC771286 | 0.0 | KC771286.1 Triticum aestivum cultivar Suwon11 NAC transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020198650.1 | 0.0 | NAC domain-containing protein 21/22-like isoform X1 | ||||
TrEMBL | M8BK83 | 0.0 | M8BK83_AEGTA; NAC domain-containing protein 21/22 | ||||
STRING | EMT22193 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10022 | 31 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12977.1 | 8e-72 | NAC family protein |