PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT21934 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | ERF | ||||||||
Protein Properties | Length: 231aa MW: 24328.2 Da PI: 5.9607 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.9 | 2.6e-18 | 36 | 86 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 + ++GVr++ +g+WvAeIr+p + r +r +lg+f +a +Aa+a++aa+++l+g EMT21934 36 CPFRGVRQRT-WGKWVAEIREP---N-RgARLWLGTFASALDAARAYDAAARALYG 86 679****999.**********8...3.35***********************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 20.442 | 37 | 94 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.3E-31 | 37 | 100 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.2E-28 | 38 | 94 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.0E-11 | 38 | 86 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.6E-9 | 38 | 49 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.25E-15 | 38 | 69 | No hit | No description |
SuperFamily | SSF54171 | 1.31E-19 | 38 | 95 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 8.6E-9 | 60 | 76 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MEQEVVAGMK QKKCCPLRRS RKGCMKGKGG PDNQQCPFRG VRQRTWGKWV AEIREPNRGA 60 RLWLGTFASA LDAARAYDAA ARALYGDCAR LNLSASPSQM QHPPAQGSGG ANGNSAPGTP 120 CCSSNNSNSS ASTPTGTPTD MDCSAWMQPS YCYSTAEAPE DFEAYVTRLP KAEDFGLEGF 180 QEVPLEVLAE AGGGVSIWDL SIAPEMAAAA ASSAAASACT VPQQPLQQPS C |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-13 | 38 | 93 | 6 | 62 | ATERF1 |
3gcc_A | 2e-13 | 38 | 93 | 6 | 62 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that binds to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by high-salt and drought stresses. {ECO:0000269|PubMed:20049613}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU952058 | 1e-103 | EU952058.1 Zea mays clone 1066007 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020188398.1 | 1e-170 | dehydration-responsive element-binding protein 2C-like | ||||
Swissprot | Q84ZA1 | 7e-85 | DRE2C_ORYSJ; Dehydration-responsive element-binding protein 2C | ||||
TrEMBL | A0A3B5ZX57 | 1e-168 | A0A3B5ZX57_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A452Z174 | 1e-168 | A0A452Z174_AEGTS; Uncharacterized protein | ||||
TrEMBL | M8BIZ4 | 1e-168 | M8BIZ4_AEGTA; Dehydration-responsive element-binding protein 2G | ||||
STRING | EMT21934 | 1e-169 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5510 | 34 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40350.1 | 3e-29 | ERF family protein |
Publications ? help Back to Top | |||
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