PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT21538 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | G2-like | ||||||||
Protein Properties | Length: 245aa MW: 27043 Da PI: 6.8462 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 93.8 | 1.4e-29 | 18 | 71 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt+eLH++F+eav+ LGG+++AtPk+il+lm+ kg++++h+kSHLQ+YR+ EMT21538 18 PRMRWTEELHRQFIEAVDCLGGQDEATPKRILQLMGTKGVSISHIKSHLQMYRS 71 9****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-27 | 14 | 72 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 12.953 | 14 | 74 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.05E-16 | 16 | 72 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 8.2E-24 | 18 | 71 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.6E-8 | 19 | 70 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MRGFERRGVR QYNRSDEPRM RWTEELHRQF IEAVDCLGGQ DEATPKRILQ LMGTKGVSIS 60 HIKSHLQMYR SSSSGSGSSN PPHASVNRCQ DHCVDGHITA TSASDRIDIP SYAVFGRGHH 120 SMLPPCQLPS IEEVFRSWEQ SRGRLQWNSS GMLNTPEKAT GWSHHANGKM CQKQQRAAVG 180 CDLTLSVGRW EEEVASSDTD ISSTTTEEAV VPARGQGASG QRPPEASADL NLDLNLDLAI 240 SSSWL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 1e-16 | 19 | 72 | 3 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-16 | 19 | 72 | 3 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-16 | 19 | 72 | 3 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-16 | 19 | 72 | 3 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JF951940 | 4e-94 | JF951940.1 Aegilops speltoides clone TaMYB57 MYB-related protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020178887.1 | 0.0 | probable transcription factor KAN4 isoform X1 | ||||
TrEMBL | M8BIF2 | 0.0 | M8BIF2_AEGTA; Putative Myb family transcription factor | ||||
STRING | EMT21538 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5493 | 37 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14600.1 | 3e-24 | G2-like family protein |