PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | EMT21400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 353aa MW: 39595.2 Da PI: 8.1934 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 133.1 | 2e-41 | 14 | 128 | 1 | 117 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvg 101 lp GfrFhPtdee+++ y +kv ++ + + +i++v+++k+ePw+Lp+k+k +ekewyf+s++d+ky+tg r+nrat gyWkatgkdke+++ +l+g EMT21400 14 LPLGFRFHPTDEEIINSYVIPKVLDEAFVT-AAIEDVNLNKYEPWELPEKAKMGEKEWYFYSRKDRKYPTGIRTNRATGVGYWKATGKDKEIFHPPLTLIG 113 699************************988.78***************99999************************************************ PP NAM 102 lkktLvfykgrapkge 117 +kktL+fykgrap+ + EMT21400 114 MKKTLIFYKGRAPT-R 128 ************98.3 PP | |||||||
2 | NAM | 35 | 4.1e-11 | 127 | 154 | 102 | 129 |
NAM 102 lkktLvfykgrapkgektdWvmheyrle 129 ++ktL+fykgrap+gekt+W+mheyrle EMT21400 127 TRKTLIFYKGRAPTGEKTNWIMHEYRLE 154 59************************85 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.4E-43 | 5 | 127 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 51.987 | 14 | 189 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-23 | 15 | 153 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.57E-13 | 128 | 189 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 353 aa Download sequence Send to blast |
MTDHLQVQQQ KLELPLGFRF HPTDEEIINS YVIPKVLDEA FVTAAIEDVN LNKYEPWELP 60 EKAKMGEKEW YFYSRKDRKY PTGIRTNRAT GVGYWKATGK DKEIFHPPLT LIGMKKTLIF 120 YKGRAPTRKT LIFYKGRAPT GEKTNWIMHE YRLESNKELT SNPSTATRTV TATKAASKEQ 180 WVVCRIFHKS TGLKKVVMPS YVMPMSTGAE HQQGLTDLDT FPPLMDYDMS SSLANPTLLP 240 AASSYQLHDI GAGSSMIGSM ALPMMNDHYI GNHRQQMISD PTPPLPFYQQ HQQMMMYMGE 300 DQSFMVGAKP GCGPSSMVSQ EDAVTGLSNN YQGNAAATAG GKTSSVNMSM DDM |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-45 | 4 | 195 | 3 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-45 | 4 | 195 | 3 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-45 | 4 | 195 | 3 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-45 | 4 | 195 | 3 | 171 | NO APICAL MERISTEM PROTEIN |
4dul_A | 4e-45 | 4 | 195 | 3 | 171 | NAC domain-containing protein 19 |
4dul_B | 4e-45 | 4 | 195 | 3 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020190152.1 | 0.0 | NAC domain-containing protein 79-like | ||||
Refseq | XP_020197199.1 | 0.0 | NAC domain-containing protein 79-like | ||||
TrEMBL | M8B9B3 | 0.0 | M8B9B3_AEGTA; Protein CUP-SHAPED COTYLEDON 2 | ||||
STRING | EMT21400 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1452 | 37 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G61430.1 | 1e-69 | NAC domain containing protein 100 |