PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT21368

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

HRT-like

Protein Properties

Length: 1025aa MW: 112866 Da PI: 10.8229

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT21368	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	54.6	1.9e-17	632	662	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 +CGv+ledGs C + P +gRKRCe HKG+R+ EMT21368 632 VCGVTLEDGSSCLEDPLEGRKRCELHKGRRV 662 7*****************************7 PP
2	HRT-like	28.7	2.3e-09	793	819	1	28
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKG 28 iCGv +++G Ck Pv gR RCeeH G EMT21368 793 ICGVVTDNG-YCKLAPVTGRERCEEHRG 819 8*****9.6*************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04827	4.7E-12	245	291	IPR006912	Harbinger transposase-derived protein
SMART	SM00465	1.9E-5	399	505	IPR000305	GIY-YIG nuclease superfamily

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:2000033	Biological Process	regulation of seed dormancy process
GO:0016021	Cellular Component	integral component of membrane
GO:0016788	Molecular Function	hydrolase activity, acting on ester bonds
GO:0097100	Molecular Function	supercoiled DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1025 aa Download sequence Send to blast
MRPYHGAMPG VIFFILVISL SKCEHKSGKC GRGQSKTKFY LTIPDYFREH SQYIPCFARI 60 GVEGNLGLYF VDDSQDVILT MQHGFTMTCE HKSGKCGRGQ SKTKFYLTFP DYFRERSQYI 120 PCFARIGVEG NLGLYFVDDS QDVILTTQHG FTMTVSVKLD KDVRAPQPGL INMDVYFPNV 180 ISRSKSDREI AQRMNAGFWM GLIIRMVHTL NKTNCVHKML KLPVLAVPGS ISRRGRITLV 240 PANNAKWTTL VKTIPNPVEE KRKRFAQEQE SARKDVERIF GVLQSQCGIV RPGFSKDDSP 300 SPGGDATGGG AEPTSQTLPE STLGRGGLAM PAVAAARLKR EDRPRTKHDS LFSPWKVLVG 360 PSDWEDHSAG KEGVQRYHTR NLPDNFPGLY ELGVARPSYD GVRARRNRSA VVVVVYLGQA 420 DNVRARLQQY GRTGSHLDTG NPLAAVGKAE MNALTAGPGL FREVFSRGYS VMFRCALMCS 480 KKAAEKTEAQ LLGVFDYAWN KLQNSACRRE EILLKLEQGS HRLSLLGRVR HLKQRVFGEK 540 AGIKINSSGS VEISSGSMKN MLPRVRAFVG FRPRLVNSGG DLNKATDIHR KCTSQANTAG 600 NKQAHRRSEG YKVKKIDVIK RRTAPIREAE AVCGVTLEDG SSCLEDPLEG RKRCELHKGR 660 RVRVAYGRKV SSSSSTCQVA IPTVESIPQQ TANPSKPDQA WQTSADQSKN LSTNAKEPSR 720 QRNGFEAKEM KIGEAPAEDE AYGASHAESQ FHQDEPVGRK WFELLKAQKS ASAPSSRGQG 780 CQTREANDDA SAICGVVTDN GYCKLAPVTG RERCEEHRGI EPPKSKGNIR GGKHPPLRST 840 ARITMLPPQL PGPAGHLPLA LAVTASFAIS CGRSSASGRS RRRRRAKPKP IVFPPPPLRR 900 LVSSSLRRLL PRPRPLRGGW LGPRGRRKAP AEDVVLLVLS LALGDRLAVL AEAWRASGLG 960 QALGIWAAVW GRARRRKRAS GLRRLAALLL GIAFCALASH FRGAAFLEGL RKTGGGRKLA 1020 RILLR

Sequence ? help Back to Top

Protein Sequence Length: 1025 aa Download sequence Send to blast

MRPYHGAMPG VIFFILVISL SKCEHKSGKC GRGQSKTKFY LTIPDYFREH SQYIPCFARI  60
GVEGNLGLYF VDDSQDVILT MQHGFTMTCE HKSGKCGRGQ SKTKFYLTFP DYFRERSQYI  120
PCFARIGVEG NLGLYFVDDS QDVILTTQHG FTMTVSVKLD KDVRAPQPGL INMDVYFPNV  180
ISRSKSDREI AQRMNAGFWM GLIIRMVHTL NKTNCVHKML KLPVLAVPGS ISRRGRITLV  240
PANNAKWTTL VKTIPNPVEE KRKRFAQEQE SARKDVERIF GVLQSQCGIV RPGFSKDDSP  300
SPGGDATGGG AEPTSQTLPE STLGRGGLAM PAVAAARLKR EDRPRTKHDS LFSPWKVLVG  360
PSDWEDHSAG KEGVQRYHTR NLPDNFPGLY ELGVARPSYD GVRARRNRSA VVVVVYLGQA  420
DNVRARLQQY GRTGSHLDTG NPLAAVGKAE MNALTAGPGL FREVFSRGYS VMFRCALMCS  480
KKAAEKTEAQ LLGVFDYAWN KLQNSACRRE EILLKLEQGS HRLSLLGRVR HLKQRVFGEK  540
AGIKINSSGS VEISSGSMKN MLPRVRAFVG FRPRLVNSGG DLNKATDIHR KCTSQANTAG  600
NKQAHRRSEG YKVKKIDVIK RRTAPIREAE AVCGVTLEDG SSCLEDPLEG RKRCELHKGR  660
RVRVAYGRKV SSSSSTCQVA IPTVESIPQQ TANPSKPDQA WQTSADQSKN LSTNAKEPSR  720
QRNGFEAKEM KIGEAPAEDE AYGASHAESQ FHQDEPVGRK WFELLKAQKS ASAPSSRGQG  780
CQTREANDDA SAICGVVTDN GYCKLAPVTG RERCEEHRGI EPPKSKGNIR GGKHPPLRST  840
ARITMLPPQL PGPAGHLPLA LAVTASFAIS CGRSSASGRS RRRRRAKPKP IVFPPPPLRR  900
LVSSSLRRLL PRPRPLRGGW LGPRGRRKAP AEDVVLLVLS LALGDRLAVL AEAWRASGLG  960
QALGIWAAVW GRARRRKRAS GLRRLAALLL GIAFCALASH FRGAAFLEGL RKTGGGRKLA  1020
RILLR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK252040	0.0	AK252040.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf148d05, mRNA sequence.
GenBank	AK362734	0.0	AK362734.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2009M06.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	M8BHZ8	0.0	M8BHZ8_AEGTA; Uncharacterized protein
STRING	EMT21368	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7948	34	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	1e-55	effector of transcription2