PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT20815
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family HSF
Protein Properties Length: 375aa    MW: 40628.6 Da    PI: 5.4713
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT20815genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind102.73.2e-32321312102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d++++++iswse+g++f+v+ + efa+++LpkyFkh+nf+SFvRQLn+Y    v  +  + k  ++ weF+++ F++g+k+ll++i+
      EMT20815  32 FLNKTYQLVDDPAVDDVISWSEDGSAFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYVLMGVLVQGFR-KIVPDRWEFANDCFRRGEKRLLCDIH 127
                   9**********************************************************99999998876.456999******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
      EMT20815 128 RRKV 131
                   *986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004154.5E-5328129IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.3E-3529129IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.13E-3129129IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.2E-2932129IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-163255IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-167082IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-168395IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MGEQAAAVSS CETPAPAEVG TGVGQRSLPT PFLNKTYQLV DDPAVDDVIS WSEDGSAFIV  60
WRPAEFARDL LPKYFKHNNF SSFVRQLNTY VLMGVLVQGF RKIVPDRWEF ANDCFRRGEK  120
RLLCDIHRRK VTPTVAATAA VTVAAAAAIP VALPVAKRQG SPVLSGDEQV LSSSSSPEPP  180
FLNQYAPSYS GSGGVASGDL GEENERLRRE NSRLTRELGQ MKKLCNNIFV LMSKYTHGQQ  240
ADAADVGNCS GESAETTALP LPPVLELLPS CPNAPTAADL GAEDEEEKMS ARLFGVCIGR  300
KRMRHDGEDL TSRGAAAEVK PEPMDAQQPP GMDGHTPEVQ AWPIYRPRPV YHPLRASDGS  360
NCYSGSDDHN GSNSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hdg_A1e-233213210112Heat shock factor protein 1
5hdn_A1e-233213210112Heat shock factor protein 1
5hdn_B1e-233213210112Heat shock factor protein 1
5hdn_C1e-233213210112Heat shock factor protein 1
5hdn_D1e-233213210112Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00575DAPTransfer from AT5G62020Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ7717550.0JQ771755.1 Triticum aestivum HSF3 mRNA, complete cds.
GenBankKP0635420.0KP063542.1 Triticum aestivum heat-responsive transcription factor (HSF-2) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020197754.10.0heat stress transcription factor B-2b-like
SwissprotQ6Z9C81e-144HFB2B_ORYSJ; Heat stress transcription factor B-2b
TrEMBLM8B7U00.0M8B7U0_AEGTA; Heat stress transcription factor B-2b
STRINGEMT208150.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.14e-58heat shock transcription factor B2A
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Xiang J, et al.
    Heat shock factor OsHsfB2b negatively regulates drought and salt tolerance in rice.
    Plant Cell Rep., 2013. 32(11): p. 1795-806
    [PMID:23949687]