PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT20689 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | AP2 | ||||||||
Protein Properties | Length: 368aa MW: 40266.5 Da PI: 4.858 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 35.9 | 1.9e-11 | 189 | 245 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++++++g+++A+++d + g +rk + g+++t+++Aa+a++ a++k++g EMT20689 189 SCFHGVTRHRWSGKYEAHLWDsTCRvEGrRRKGKQ-GSYDTEQKAARAYDVAALKFFG 245 789******************77668776667777.*****99***********9986 PP | |||||||
2 | AP2 | 38.7 | 2.6e-12 | 288 | 335 | 5 | 55 |
AP2 5 GVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 r++ k+grW A+I g ++ ++lg+f t+eeAa+a++ a+ +++g EMT20689 288 YLRRRQKDGRWQARIGLiA---G-TRDIYLGTFKTEEEAAEAYDIAAIEIRG 335 5689999*******88832...2.5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.16E-13 | 189 | 254 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 7.0E-8 | 189 | 243 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 16.621 | 190 | 253 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.2E-16 | 190 | 259 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.1E-12 | 191 | 253 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-5 | 191 | 202 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.65E-15 | 191 | 252 | No hit | No description |
PROSITE profile | PS51032 | 15.857 | 282 | 343 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.5E-6 | 290 | 335 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.1E-16 | 291 | 344 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.63E-20 | 291 | 343 | No hit | No description |
SuperFamily | SSF54171 | 2.68E-14 | 291 | 345 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 7.1E-21 | 291 | 349 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-5 | 325 | 345 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 368 aa Download sequence Send to blast |
MMKSGEEVSQ GQQMNGFVEE KAAGESGDGR KIERSPSINL NSLPAIAPAT TEIGVLHCAV 60 ESEANDASTQ KGDESSGTDQ KKVPKNEEVD EGEVQACADV KSHSVDPLNS ENHAGEKDAL 120 VTVPENEGCA DGGDNYKGVQ VLSIVKKDES EEIVDSINPV TVAEYREEKG TAGSTSAITA 180 VRAPGSRSSC FHGVTRHRWS GKYEAHLWDS TCRVEGRRRK GKQGSYDTEQ KAARAYDVAA 240 LKFFGLNTKL NFSLWTSGSH ESILFQISEY EKELADIQDM SPEECVTYLR RRQKDGRWQA 300 RIGLIAGTRD IYLGTFKTEE EAAEAYDIAA IEIRGKNAVT NFDRSNYMDR GMHCIEGAGL 360 KLLATKPE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 215 | 222 | GRRRKGKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK252982 | 0.0 | AK252982.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf180b05, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020153211.1 | 0.0 | AP2-like ethylene-responsive transcription factor BBM1 | ||||
Refseq | XP_020174447.1 | 0.0 | AP2-like ethylene-responsive transcription factor BBM1 | ||||
Swissprot | Q6PQQ3 | 9e-56 | AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5 | ||||
TrEMBL | R7WGN4 | 0.0 | R7WGN4_AEGTA; AP2-like ethylene-responsive transcription factor AIL5 | ||||
STRING | EMT20689 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11888 | 29 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57390.1 | 8e-47 | AINTEGUMENTA-like 5 |
Publications ? help Back to Top | |||
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