PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT20356
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family C2H2
Protein Properties Length: 579aa    MW: 64633.1 Da    PI: 8.071
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT20356genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.65.3e-06138160123
               EEETTTTEEESSHHHHHHHHHHT CS
   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
               + C+ Cg +F+ + +Lk+H+++H
  EMT20356 138 HDCKECGARFKKPAHLKQHMQSH 160
               56*******************99 PP
2zf-C2H218.84.3e-06296320123
               EEET..TTTEEESSHHHHHHHHHHT CS
   zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
               + C+   C+ s+srk++L+rH+ tH
  EMT20356 296 FACHvdGCPFSYSRKDHLNRHLLTH 320
               78*********************99 PP
3zf-C2H210.70.0017325350123
               EEET..TTTEEESSHHHHHHHHHH.T CS
   zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
               + Cp   C++ Fs k n +rH    H
  EMT20356 325 FMCPmeGCNRKFSIKGNIQRHVEEfH 350
               78*******************98767 PP
4zf-C2H219.72.2e-06362386123
               EEET..TTTEEESSHHHHHHHHHHT CS
   zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
               + Cp  +Cgk+F+  s L++H  +H
  EMT20356 362 FICPeaNCGKVFKYASKLQKHEESH 386
               78*******************9988 PP
5zf-C2H220.41.4e-06453477223
               EET..TTTEEESSHHHHHHHHHH.T CS
   zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
               kC+  dC++sFs ksnL++Hi+  H
  EMT20356 453 KCNfkDCKRSFSKKSNLHKHIKAvH 477
               79999****************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355113759IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.6E-6137174No hitNo description
PROSITE profilePS5015712.279138165IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.4E-5138162IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0037138160IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280140160IPR007087Zinc finger, C2H2
SuperFamilySSF576676.35E-7291322No hitNo description
Gene3DG3DSA:3.30.160.601.8E-9292322IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0018296320IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.307296325IPR007087Zinc finger, C2H2
PROSITE patternPS000280298320IPR007087Zinc finger, C2H2
SuperFamilySSF576673.28E-6323351No hitNo description
Gene3DG3DSA:3.30.160.601.4E-6323351IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.245325355IPR007087Zinc finger, C2H2
SMARTSM003550.029325350IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280327350IPR007087Zinc finger, C2H2
SuperFamilySSF576675.84E-5358388No hitNo description
Gene3DG3DSA:3.30.160.603.0E-7358386IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0022362386IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.115362391IPR007087Zinc finger, C2H2
PROSITE patternPS000280364386IPR007087Zinc finger, C2H2
SMARTSM003556.5394419IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280396419IPR007087Zinc finger, C2H2
SMARTSM0035512422443IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.04E-8433490No hitNo description
Gene3DG3DSA:3.30.160.601.5E-6433474IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0048452477IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.36452482IPR007087Zinc finger, C2H2
PROSITE patternPS000280454477IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.8E-4476505IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.6483509IPR007087Zinc finger, C2H2
SMARTSM003554.8483509IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280485509IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 579 aa     Download sequence    Send to blast
MGEGDPDSGG GVGATSASPS HAPRPAAAAP VRDIRRYKCE FCDVVRSKKR LIRDHVLEHH  60
KSTRATDFCG SCELWVSLGL DLDLAAAGGG RPCEGHQAST RATDFCGSCE LWDEVDGLDE  120
YNVGGGGGSA PPGKEIGHDC KECGARFKKP AHLKQHMQSH SPESTRATDF CGSCELWDEV  180
DGLDEYNVGG GGGSAPPGKE IGHDCKECGA RLFNCVKHWI PKNSKMREGP EWTSTRMGRP  240
SWEAPSGSLF HALLQHWIPR TPKCQKALNG PVSGRGDPPE KLHQECLIHA LPQRPFACHV  300
DGCPFSYSRK DHLNRHLLTH QGKLFMCPME GCNRKFSIKG NIQRHVEEFH EDGPQCGGKK  360
EFICPEANCG KVFKYASKLQ KHEESHVNLD YTEVICCEPG CMKTFTNVEC LKAHNQSCHQ  420
YVQCDICDTK QLKKNFKRHQ RMHEGSFVTE RIKCNFKDCK RSFSKKSNLH KHIKAVHEQS  480
RPFTCGFSGC GQKFSYKHVR DNHEKSSVHV LFEELIIRTL FTSWQGDFVE ADEQLRPHPG  540
GRKRKPISVD TFMRKRVAAP DAPPACSDGT EYLRWLLSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2i13_A6e-1329350619183Aart
2i13_B6e-1329350619183Aart
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3728170.0AK372817.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3013K06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020149307.10.0transcription factor IIIA-like
RefseqXP_020149308.10.0transcription factor IIIA-like
RefseqXP_020149309.10.0transcription factor IIIA-like
RefseqXP_020149310.10.0transcription factor IIIA-like
TrEMBLR7WCP60.0R7WCP6_AEGTA; Transcription factor IIIA
STRINGEMT203560.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23823882
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.22e-82transcription factor IIIA