PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT20212 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | MYB_related | ||||||||
Protein Properties | Length: 252aa MW: 28503.8 Da PI: 6.4462 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.9 | 1.3e-09 | 141 | 184 | 4 | 47 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 WT E++l++++ +G g+Wk I++++ +++t q+ s+ qky EMT20212 141 WTIGEHKLFLRGLGVYGRGDWKNISKHFVTTKTHVQVSSHAQKY 184 9999***************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.246 | 133 | 189 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.56E-14 | 135 | 190 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.6E-8 | 136 | 194 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.3E-5 | 137 | 187 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 3.5E-12 | 138 | 187 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 5.2E-7 | 141 | 184 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.97E-5 | 141 | 185 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MDPLVNQGWT SSEEEEARSV IVGHNSHTIV YDDKNKRHNN IVDALHELFP SKTRQQEIGA 60 SNICGINTMG DHVIDGYGVR EEEEAATMND NELIFGHALE DTRITETKEA PLMVDKNKMQ 120 ILENNITSDQ PAVPPRQGRF WTIGEHKLFL RGLGVYGRGD WKNISKHFVT TKTHVQVSSH 180 AQKYFRRLHK RASFGTQRYS INDVGLHDED PWSMNNSSGP SQMLGSTGLN NETSFGLQAP 240 DFCLHYKIVI TQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020169909.1 | 8e-68 | uncharacterized protein LOC109755402 | ||||
TrEMBL | R7WC65 | 0.0 | R7WC65_AEGTA; Myb-like protein J | ||||
STRING | EMT20212 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP842 | 30 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58900.1 | 6e-18 | Homeodomain-like transcriptional regulator |