PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT20042
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family C2H2
Protein Properties Length: 585aa    MW: 61936.5 Da    PI: 6.6835
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT20042genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.6e-05110127219
               EETTTTEEESSHHHHHHH CS
   zf-C2H2   2 kCpdCgksFsrksnLkrH 19 
               +C++Cgk F+++ +L  H
  EMT20042 110 VCENCGKEFTSWKSLLDH 127
               6***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.93E-63658No hitNo description
PROSITE profilePS501578.7043658IPR007087Zinc finger, C2H2
SMARTSM003555.23658IPR015880Zinc finger, C2H2-like
PfamPF139127.9E-53658IPR007087Zinc finger, C2H2
PROSITE patternPS0002803858IPR007087Zinc finger, C2H2
SuperFamilySSF576678.93E-6104129No hitNo description
PROSITE profilePS501578.6109136IPR007087Zinc finger, C2H2
SMARTSM00355180109129IPR015880Zinc finger, C2H2-like
SuperFamilySSF576677.26E-8280303No hitNo description
PROSITE profilePS5015710.221281308IPR007087Zinc finger, C2H2
SMARTSM003550.13281303IPR015880Zinc finger, C2H2-like
PfamPF139124.1E-9281305IPR007087Zinc finger, C2H2
PROSITE patternPS000280283303IPR007087Zinc finger, C2H2
SuperFamilySSF576677.26E-8398425No hitNo description
PfamPF139121.8E-12402426IPR007087Zinc finger, C2H2
PROSITE profilePS501579.349403425IPR007087Zinc finger, C2H2
SMARTSM003550.46403425IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280405425IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 585 aa     Download sequence    Send to blast
MAMVMENQQP VAQMQLVPAP PRPPPPPPPA PQAYKHHCKV CKKGFMCGRA LGGHMRAHGI  60
ADDAQAAEEA FDDGGGVVGE SSEAGSPSPT TAKRMYGLRA NPGRLRNCRV CENCGKEFTS  120
WKSLLDHGRC SFDEDDDLDG SLRSSSPLHN NTDEGVDEDE EEEGDLALAS GWSKGKRSRR  180
AKVMITGSGA ISEVQQPAPS SEEEDLANCL VMLSSSRVTQ PTVHVDADQE SSASASKDEE  240
RNRLLVPQPL SIIPPMTAQF KFSAPQVVVA QHVPTVPRGL FECKACKKVF TSHQALGGHR  300
ASHKKVKGCF AAKLESSRNE TTHQHAMASA ALHDNTRAIP EAVGDTSTTE GKTGNLDAGK  360
ATSVGAGEVV VPTATTEMAI MPIADAAPVA AAFSPFKKKG KVHECSICHR VFTSGQALGG  420
HKRCHWLTSS ATDPAKLQPV VPDHLMAAMC HHLTLGRPMF DTADQRILDL NVPTNPSAEA  480
IATRQAAELN DIPLCLNAPA SMYAQSWTGH SNASHVNKTG TSSRNDAAAA GGAATEDEAD  540
STSAKKAKVS DLKDMKVAGE SLSWLQVGIG ISSSEKNEKS TQEGA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3735500.0AK373550.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3034L08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020186304.10.0uncharacterized protein LOC109772023
TrEMBLR7WBT60.0R7WBT6_AEGTA; Uncharacterized protein
STRINGEMT200420.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35243262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.12e-18C2H2-like zinc finger protein