PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT19609

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

ARF

Protein Properties

Length: 1151aa MW: 128667 Da PI: 6.6441

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT19609	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	72.1	7.1e-23	123	224	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f+k+lt sd++++g +++p++ ae++ + +++ ++++ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F ++++++l++ EMT19609 123 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QEIQARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVIFV--RDERQQLLL 219 99***************************954.4444.48********************************************..4577788 PP EEE-S CS B3 95 kvfrk 99 +++r+ EMT19609 220 GIRRA 224 *9997 PP
2	Auxin_resp	117.7	9.4e-39	249	332	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+++YnPras++eFv++++k++ka++ +++s+GmRf+m+fete+ +rr++Gt++g++dldpvrW+nS+Wr+L+ EMT19609 249 AAHAAANNSPFTIFYNPRASPTEFVIPFAKYQKAVYgNQLSLGMRFRMMFETEELGTRRYMGTITGINDLDPVRWKNSQWRNLQ 332 79********************************9*******************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	2.35E-42	112	252	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.2E-41	115	238	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.14E-19	122	214	No hit	No description
SMART	SM01019	7.4E-23	123	225	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.899	123	225	IPR003340	B3 DNA binding domain
Pfam	PF02362	7.6E-21	123	224	IPR003340	B3 DNA binding domain
Pfam	PF06507	2.3E-33	249	332	IPR010525	Auxin response factor
Pfam	PF02309	5.2E-10	1015	1102	IPR033389	AUX/IAA domain
PROSITE profile	PS51745	27.166	1017	1101	IPR000270	PB1 domain
SuperFamily	SSF54277	3.04E-7	1032	1096	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009734	Biological Process	auxin-activated signaling pathway
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1151 aa Download sequence Send to blast
MGFRCVFSGE KKAPAINSDL WHACAGPLVQ LPPAGSLVVY FPQGHSEQVA ASMQKDVDAH 60 VPNYPNLPSK LICLLHNITL HADLETDEVY AQMTLQPVTS YGKEALQLSE LALKQARPQN 120 EFFCKTLTAS DTSTHGGFSV PRRAAEKIFP PLDFSMQPPA QEIQARDLHD NVWTFRHIYR 180 GQPKRHLLTT GWSLFVSGKR LFAGDSVIFV RDERQQLLLG IRRANRQPTN ISSSVLSSDS 240 MHIGILAAAA HAAANNSPFT IFYNPRASPT EFVIPFAKYQ KAVYGNQLSL GMRFRMMFET 300 EELGTRRYMG TITGINDLDP VRWKNSQWRN LQVGWDESAA GERRNRVSIW EIEPVAAPFF 360 ICPPPFFGAK RPRQLDDESS EMENLLKRAM PWLGEEICIK DPQTQNTIMP GLSLVQWMNM 420 NMQQSSSFAN TAMQSEYLRS ITNPSMQNIG SGDLSRQLCL QNQLLQQNNM QFNTPKLPQQ 480 MQPNNELSKA ALPLNQNGAS IKPEEQTQDA SNFQRQQQSM NYALPLSQAQ TNLAQAQVLI 540 QSQMQQQQQQ PHISQNQLPA VSQPLLSHQQ QQHHHQQQQQ QHQQQEQQHQ QQQQQQKFLQ 600 QQQLLLQQQQ LQQHQHQLQQ QQQQQLGKMP AQLPNLSNQQ LQLSDQQLQL QLLQKLQQQQ 660 QSLLSQPGVT LAQLPLIQEQ QKLLMDMQQQ LSSSHSLSQQ QMMPQQSTKI PSQVASLPPP 720 MQPDTTHQKL PQKQALPADT LEAAIPTTTS HKFSSANGSP LRMPGATHSV VTEEIPSCST 780 SPSTANGNHL LQPVPGRDQY SSMINTEKAP HSTAPMSVPS SLDAVTGAQR MTKELPKLNS 840 NVKQNMMPSK LPNGGAGPQN FANNAPPTDY LETASSATSV WLSQADGLLH PNFPMTNFSQ 900 QQLFKDAPPD TEIPAEIPSN NALFGISNDG HVGFPMVTDD FLTNGIDAVK YENHISTDID 960 NNYRIPKDAQ QEISSSMVSQ SFGASDMAFN SIDSGINDGA FLNKSSWPPA PPVKRMRTFT 1020 KVYKRGAVGR SIDISQYAGY EELKHALARM FSIEGQLEER QRIGWKLVYR DHEDDILLLG 1080 DDPWEEFVNC VKCIRILSPQ EVQQMSLDGD LGSSVVPNQA CSSSEGGGNA WRARCDQNSG 1140 NPSTGSYDQF E

Sequence ? help Back to Top

Protein Sequence Length: 1151 aa Download sequence Send to blast

MGFRCVFSGE KKAPAINSDL WHACAGPLVQ LPPAGSLVVY FPQGHSEQVA ASMQKDVDAH  60
VPNYPNLPSK LICLLHNITL HADLETDEVY AQMTLQPVTS YGKEALQLSE LALKQARPQN  120
EFFCKTLTAS DTSTHGGFSV PRRAAEKIFP PLDFSMQPPA QEIQARDLHD NVWTFRHIYR  180
GQPKRHLLTT GWSLFVSGKR LFAGDSVIFV RDERQQLLLG IRRANRQPTN ISSSVLSSDS  240
MHIGILAAAA HAAANNSPFT IFYNPRASPT EFVIPFAKYQ KAVYGNQLSL GMRFRMMFET  300
EELGTRRYMG TITGINDLDP VRWKNSQWRN LQVGWDESAA GERRNRVSIW EIEPVAAPFF  360
ICPPPFFGAK RPRQLDDESS EMENLLKRAM PWLGEEICIK DPQTQNTIMP GLSLVQWMNM  420
NMQQSSSFAN TAMQSEYLRS ITNPSMQNIG SGDLSRQLCL QNQLLQQNNM QFNTPKLPQQ  480
MQPNNELSKA ALPLNQNGAS IKPEEQTQDA SNFQRQQQSM NYALPLSQAQ TNLAQAQVLI  540
QSQMQQQQQQ PHISQNQLPA VSQPLLSHQQ QQHHHQQQQQ QHQQQEQQHQ QQQQQQKFLQ  600
QQQLLLQQQQ LQQHQHQLQQ QQQQQLGKMP AQLPNLSNQQ LQLSDQQLQL QLLQKLQQQQ  660
QSLLSQPGVT LAQLPLIQEQ QKLLMDMQQQ LSSSHSLSQQ QMMPQQSTKI PSQVASLPPP  720
MQPDTTHQKL PQKQALPADT LEAAIPTTTS HKFSSANGSP LRMPGATHSV VTEEIPSCST  780
SPSTANGNHL LQPVPGRDQY SSMINTEKAP HSTAPMSVPS SLDAVTGAQR MTKELPKLNS  840
NVKQNMMPSK LPNGGAGPQN FANNAPPTDY LETASSATSV WLSQADGLLH PNFPMTNFSQ  900
QQLFKDAPPD TEIPAEIPSN NALFGISNDG HVGFPMVTDD FLTNGIDAVK YENHISTDID  960
NNYRIPKDAQ QEISSSMVSQ SFGASDMAFN SIDSGINDGA FLNKSSWPPA PPVKRMRTFT  1020
KVYKRGAVGR SIDISQYAGY EELKHALARM FSIEGQLEER QRIGWKLVYR DHEDDILLLG  1080
DDPWEEFVNC VKCIRILSPQ EVQQMSLDGD LGSSVVPNQA CSSSEGGGNA WRARCDQNSG  1140
NPSTGSYDQF E

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4ldu_A	1e-168	8	353	44	388	Auxin response factor 5
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK367496	0.0	AK367496.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2058D09.
GenBank	AK369713	0.0	AK369713.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2096H17.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020163202.1	0.0	auxin response factor 19-like
Swissprot	Q0D9R7	0.0	ARFS_ORYSJ; Auxin response factor 19
TrEMBL	R7WG30	0.0	R7WG30_AEGTA; Auxin response factor
STRING	EMT19609	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1409	35	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	0.0	auxin response factor 19

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Zhang S, et al. The auxin response factor, OsARF19, controls rice leaf angles through positively regulating OsGH3-5 and OsBRI1. Plant Cell Environ., 2015. 38(4): p. 638-54 [PMID:24995795]