PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT19461
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family GRAS
Protein Properties Length: 991aa    MW: 110697 Da    PI: 5.6651
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT19461genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS1755.7e-541034032303
      GRAS   2 velLlecAeavssgdlelaqalLarlsel..aspdg...dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
               ++lLl+ Aeav++gd + a a+ +rl  l   sp+     ++ Rla +f+++L++r+++ +++++  lp         s++++++++ +e+sP+ kf+h+t
  EMT19461 103 TDLLLTGAEAVEAGDPRFALAVFSRLDGLllGSPENaaaGSFDRLAYHFAQGLRSRISSASTSCS--LPEP-----LPSDRMSVQHIIQELSPFAKFAHFT 196
               689***********************998885554422379*****************9332222..3322.....346899999**************** PP

      GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198
               aNqaIl+a++g+++vHi+D++i++G+QWp+L+  La    g  s+ +T+v + +  s    ++ ++rL++fA++l++pf+++ l  ++ ed  l+e++ + 
  EMT19461 197 ANQAILDATKGDTHVHIVDLNIGEGIQWPSLMSDLARH--GGMSFHLTAVTADADYSDGVHHASARRLSEFADSLNLPFQYSSLCLHSDED--LHEFSKNC 293
               ************************************84..6689********8877999999*********************86655444..57887777 PP

      GRAS 199 gEalaVnlvlqlhrlldesvsleserdevL.klvkslsPkvvvvveqeadh.nse......sFlerflealeyysalfdsl.eaklpres.eerikvErel 289
               + +++ ++      ++    +l s+ +++L  +vk l+Pk++v+ve+e+ + ++e      sF++ f+eal++++++f+sl +  ++ ++    + vEre+
  EMT19461 294 KGSVILSCDTTG--MP---YKLLSKLPALLpACVKLLQPKLMVIVEEELVRvGKEaslckaSFVDFFFEALHHFTTVFESLaSCFFGGNQgACLRLVEREM 389
               888888887743..33...345555677773579*************95543444566666********************555566665678899***** PP

      GRAS 290 lgreivnvvacega 303
               +g++i++ v + g+
  EMT19461 390 VGPRIQDFVGQYGS 403
               ********988776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098530.73476456IPR005202Transcription factor GRAS
PfamPF035142.0E-51103403IPR005202Transcription factor GRAS
SuperFamilySSF525405.8E-24667885IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009314.4E-7758881IPR002182NB-ARC
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043531Molecular FunctionADP binding
Sequence ? help Back to Top
Protein Sequence    Length: 991 aa     Download sequence    Send to blast
METMSYPCSP LLSLPTHEES NFFMWSPQVA LHENATIHVD HPTDQQPDNV FLDTAVQDYA  60
NDWHQQDASD VGVFTYCDER IQGQESGNLV AIQEELMEEN SLTDLLLTGA EAVEAGDPRF  120
ALAVFSRLDG LLLGSPENAA AGSFDRLAYH FAQGLRSRIS SASTSCSLPE PLPSDRMSVQ  180
HIIQELSPFA KFAHFTANQA ILDATKGDTH VHIVDLNIGE GIQWPSLMSD LARHGGMSFH  240
LTAVTADADY SDGVHHASAR RLSEFADSLN LPFQYSSLCL HSDEDLHEFS KNCKGSVILS  300
CDTTGMPYKL LSKLPALLPA CVKLLQPKLM VIVEEELVRV GKEASLCKAS FVDFFFEALH  360
HFTTVFESLA SCFFGGNQGA CLRLVEREMV GPRIQDFVGQ YGSVTVEVTT PVVLEREGSS  420
QLSTDVLISA VAGDLASRFI SFLAHIYDTR TCEDDDRRRL EFVLLRIHTV VEEAEGWHIT  480
NRRMFLQLKA LIQDLGMEVL ISAVVGDLVS RFISFLAQNY GTQTCVEEDR RRLELILLRM  540
HMVVEEAEGR QITNRGMFLH LKTLIDGVHL GYYMLDRLKF QSLGEESVED DEVSNWSQSL  600
AVSTFSAAKR LRLAVAASIM KNAPVAFGTG STTNLKRVLE SLEAKTADMR EFVVLLGSCP  660
RLPRQPYCVH LYMDKCMFGR HVEKEQLINF LLCDDSHHDC THISILPIIG PHRIGKKTLV  720
QHACKDERVC NHFSHMFFFK GDDLRNGVFA FNNQAASGKY LFVVDFIFDV DEAAWTNFQS  780
YLQKLPGAGI KIVVTGRAEQ VANLGTAQPI RLKSLSQEEY WYYFKALAFG SMDPDDHPKL  840
ASLGMQLAAL LQGSFLGANI LGELLRANPS TEFWRGVLSS IRVLVREHMS SFGTHPEDLL  900
GRNFPVNFGS AALVGGPAQG YLVYDLREAG PAQSELPKLT SQELLTGRDI PVEDKFEVLV  960
WRSRIPPYCD YVVTYEKQKN HVAVRKRQRK S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-2314340255308Protein SCARECROW
5b3h_A4e-2314340254307Protein SCARECROW
5b3h_D4e-2314340254307Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3669190.0AK366919.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2048E24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024310552.10.0uncharacterized protein LOC100821863
TrEMBLR7WAZ50.0R7WAZ5_AEGTA; Nodulation-signaling pathway 2 protein
STRINGEMT194610.0(Aegilops tauschii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.16e-26GRAS family protein