PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT19288
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family C2H2
Protein Properties Length: 1121aa    MW: 123771 Da    PI: 8.2599
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT19288genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.000459991021323
                ET..TTTEEESSHHHHHHHHHHT CS
   zf-C2H2    3 Cp..dCgksFsrksnLkrHirtH 23  
                Cp   Cgk F ++ +L +H ++H
  EMT19288  999 CPvnGCGKKFFTHKYLLQHRKVH 1021
                9999*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5118434.1081162IPR003347JmjC domain
SMARTSM005582.4E-411162IPR003347JmjC domain
SuperFamilySSF511975.49E-259159No hitNo description
PfamPF023738.6E-3726145IPR003347JmjC domain
SMARTSM0035517900922IPR015880Zinc finger, C2H2-like
SMARTSM003551.8923947IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.847923952IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.5E-4924948IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280925947IPR007087Zinc finger, C2H2
SMARTSM0035546974996IPR015880Zinc finger, C2H2-like
SMARTSM003550.569971021IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.4879971026IPR007087Zinc finger, C2H2
PROSITE patternPS0002809991021IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.6E-69991020IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.55E-1410081064No hitNo description
Gene3DG3DSA:3.30.160.602.5E-710211047IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.006210271051IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.32310271056IPR007087Zinc finger, C2H2
PROSITE patternPS00028010291051IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.1E-710481069IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0032259Biological Processmethylation
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0035067Biological Processnegative regulation of histone acetylation
GO:0040010Biological Processpositive regulation of growth rate
GO:0045815Biological Processpositive regulation of gene expression, epigenetic
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0008168Molecular Functionmethyltransferase activity
GO:0046872Molecular Functionmetal ion binding
GO:0071558Molecular Functionhistone demethylase activity (H3-K27 specific)
Sequence ? help Back to Top
Protein Sequence    Length: 1121 aa     Download sequence    Send to blast
MRAAARGPGS LLRFMRDEVP GVTTPMLYVG MLFSWFAWHV EDHDLHSLNY MHLGAAKTWY  60
GVPRDAALAF EDVVRVHGYG GEVNALEAFA TLGQKTTLLS PELLVGSGVP CCRLVQNAGE  120
FVVTFPGSYH CGFSHGFNCG EASNIATPEW LRVAKEAAVR RASINQPPLL SHYQLLYELA  180
LSMCIRDPSI GAMEPRSSRL KEKKKGEGGQ LVKKLFVQNA IQDNELLSCL LNDGSSCIIL  240
PINAHDGPVL SALRSRSQLI PKSKLSRCTH DSHNAEGDKA DVISAAGLLD QGLLSCVSCG  300
ILSFSCVAVI KPRECASKYF MSSDYNSIND QIVGSGGSHL ANAAGSEGTN GGILRPSFEP  360
YGNAILPDAG PVTRNSAPDL LASPYGNQPD TDEDNRNKKI KVSHDSSELD GTKIPSSSIK  420
CQQRPSSQSS QCIGGSSISN GPRGVRTRNK YRLKMALSQG FQLKNNYWTM EQKVQPEPSR  480
SKETVKEPLD VNGAENDATC NSAAISVGDP RISTTTMDNL NKPIVKIDKD SSRMHVFCLE  540
HAVEVEKQLQ AIGGAHVILL CRPEYLKIEA EARSLAAELE VEHGWKDIHF REANMEDRKM  600
IEELLQDEES IPTSSDWAVK LGTNLYYSAN LAKSPLHNKQ IPYNRVIYRA FGCSSPDNSP  660
VKLENCEGSQ DRQKKIVLAG RWCGKAWMSN QVHPFLAQRI ETSELEEADK SSGVEASKRK  720
SSTITNVPKS SKKRENMAVE VTTDTKRPRL AEGHSSKALK GVAEVSHPAP TAVVPRVSSR  780
IADRANKLKS EMTEEDDDPA CRPKPKVTSH SRRRPPKKIE VEAKKQMKMS KGDKMMVPTA  840
PNDDEEHPSA AKGGPSAGPA TKLELSPRKH RTRTKTMKQL KKATGEERTP RDHPMHVEGY  900
TCSIEGCSMS FDTRNELSLH ELDICPVKGC GKKFFTHKFL LQHRKVHTET MKQLKKATGE  960
ERAPRDHPMR VEGYTCGIES CSMSFDTKKE LSLHERDICP VNGCGKKFFT HKYLLQHRKV  1020
HTEDRPLKCP WEGCDVAFKW AWARTEHLRV HTGDRPYVCR EPGCAETFSC ELVGGGSAQK  1080
KGTDPLAVVD PFVLLGCPPS LWDGMLALLF GAVRIETWEW D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ip0_A2e-511183167353Transcription factor jumonji (Jmj) family protein
6ip4_A2e-511183167353Arabidopsis JMJ13
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtHistone demethylase that demethylates 'Lys-27' (H3K27me) of histone H3 with a specific activity for H3K27me3 and H3K27me2. No activity on H3K4me3, H3K9me3, H3K27me1 and H3K36me3. Involved in biotic stress response. May demethylate H3K27me3-marked defense-related genes and increase their basal and induced expression levels during pathogen infection. {ECO:0000269|PubMed:24280387}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00608ChIP-seqTransfer from AT3G48430Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress, abscisic acid (ABA), jasmonic acid (JA), the ethylene precursor ACC and infection by the bacterial pathogen Xanthomonas oryzae pv. oryzae. {ECO:0000269|PubMed:24280387}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164795.10.0lysine-specific demethylase JMJ705-like
SwissprotQ5N7120.0JM705_ORYSJ; Lysine-specific demethylase JMJ705
TrEMBLR7WBU20.0R7WBU2_AEGTA; Lysine-specific demethylase 5A
STRINGEMT192880.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53463246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.11e-122relative of early flowering 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]