PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT19064 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | AP2 | ||||||||
Protein Properties | Length: 367aa MW: 41712.1 Da PI: 9.9922 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54 | 4.1e-17 | 32 | 81 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g EMT19064 32 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 81 78*******************......55************************997 PP | |||||||
2 | AP2 | 40.9 | 5.1e-13 | 124 | 174 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+ + eAa+a+++a+ k +g EMT19064 124 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDNEVEAARAYDKAAIKCNG 174 89********.7******5553..2.26**********99**********99776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 3.92E-16 | 32 | 90 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.8E-9 | 32 | 81 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.794 | 33 | 89 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.3E-17 | 33 | 90 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.3E-32 | 33 | 95 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.9E-8 | 124 | 174 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-17 | 124 | 183 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 4.41E-24 | 124 | 184 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 8.5E-16 | 125 | 182 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.9E-31 | 125 | 188 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.277 | 125 | 182 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-6 | 126 | 137 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-6 | 164 | 184 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 367 aa Download sequence Send to blast |
MRILQLQQQQ AHAPPPPPVA KKSRRGPRSR SSQYRGVTFY RRTGRWESHI WDCGKQVYLG 60 GFDTAHAAAR AYDRAAIKFR GVDADINFNL SDYEDDMKQM KGLSKEEFVH VLRRQSTGFS 120 RGSSKYRGVT LHKCGRWEAR MGQFLGKKYI YLGLFDNEVE AARAYDKAAI KCNGREAVTN 180 FEPSTYDAEL LNEVAAEGAD VDLNLSISQP TSQSPKRDKS SLGLQLHHGS YEGSELKRPK 240 ASTNAFFKRL GNQSNFTAGF VDAPPEMVAI PHRYPLLTEH PPIWHGQSYP LFLNNEEAAR 300 DHSRRPEVAT GAVPTWAWRT FYKVCLEMSI SKNGDFQWKN ISLKWMVSKK LRYASEGVHQ 360 AKFEADK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00615 | PBM | Transfer from AT2G28550 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX402084 | 0.0 | JX402084.1 Phyllostachys edulis transcription factor AP2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020170161.1 | 0.0 | floral homeotic protein APETALA 2-like isoform X1 | ||||
Swissprot | B8AXC3 | 1e-148 | AP21_ORYSI; APETALA2-like protein 1 | ||||
TrEMBL | R7WFK3 | 0.0 | R7WFK3_AEGTA; Floral homeotic protein APETALA 2 | ||||
STRING | EMT19064 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10083 | 29 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.3 | 2e-98 | related to AP2.7 |