PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT19036 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | MYB_related | ||||||||
Protein Properties | Length: 429aa MW: 48284 Da PI: 6.0235 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 38.8 | 2.2e-12 | 264 | 310 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+ WT+eE++ ++ + + +G g+Wk I++++ +++t+ q+ s+ qk+ EMT19036 264 RKFWTKEEHKSFLYGLEVYGRGDWKNISKHFVTTKTPVQVSSHAQKF 310 678******************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.463 | 259 | 315 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 3.0E-13 | 263 | 313 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 4.3E-9 | 263 | 316 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.8E-10 | 263 | 313 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 5.31E-16 | 263 | 316 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.4E-8 | 267 | 309 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.81E-9 | 267 | 311 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 429 aa Download sequence Send to blast |
MDPIVNQGWT SSEVEEASSL IARLNTNKIM YDDNDDKNKK HNYIVNSLHA LFPSKTMKQV 60 TNRYIDLAVE MHMIQRREGT HVTSGSPQNI FTFCDPVNGN YELPMEENGA SSTHGIYTMG 120 DHANENFGIR EEATIMDNNG LSFGCAMENT GITVTGEAPL MADNNKMKVL ENNISIDQPV 180 VAPHQRGFWT DEEHSMGGLV NENFEVQEDE GTTMDDNGFS FRCALEDTRI RKTEEAPMMV 240 NKNKMVVLES NTSIDRPAVA AHQRKFWTKE EHKSFLYGLE VYGRGDWKNI SKHFVTTKTP 300 VQVSSHAQKF FKRIERKALS GTKRYSINDV RLHDNELLAA NNSSAPRQTL SFASLYNDPS 360 FRLQAPTSSF AVMNNLAQCS PSIYNQQVGQ QPMWREQQMM GSTAAVMGRV GTYVPDGQHG 420 SAYFYLGNV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020169907.1 | 0.0 | uncharacterized protein LOC109755400 | ||||
TrEMBL | R7WA60 | 0.0 | R7WA60_AEGTA; Myb-like protein J | ||||
STRING | EMT19036 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP842 | 30 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58900.1 | 2e-19 | Homeodomain-like transcriptional regulator |