PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT18945 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | MYB_related | ||||||||
Protein Properties | Length: 505aa MW: 55590.5 Da PI: 4.8103 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 35.7 | 2e-11 | 340 | 386 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+ WT eE++ ++ + + +G g+Wk I++++ +++t+ q+ s+ qk+ EMT18945 340 RKLWTIEEHKSFLYGLEIYGRGDWKNISKHFVTTKTPVQVSSHAQKF 386 567******************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 12.314 | 338 | 391 | IPR017884 | SANT domain |
SuperFamily | SSF46689 | 3.88E-15 | 339 | 392 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.8E-9 | 339 | 389 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 1.9E-12 | 339 | 389 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 6.6E-9 | 339 | 393 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.0E-8 | 340 | 385 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.29E-7 | 343 | 387 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 505 aa Download sequence Send to blast |
MSPENTTTAA HGSGVDATVA PLAAGDEEEH EHVQLGELGP LVASMVLEGD RGGRSELADD 60 GRGSAELREV RDDPDQQGPL VSGSGHGTER GWGGSVIQGW TSSQVEEARS LIARLNTNKI 120 MYNANDDKNK KHNYIVNSLH ALFPSKTMQQ LREGTHVTGG SPQNMLTFCE PVNGNYELPG 180 EKNGASNIHG VYTMGDHANG NFGVREEEAT IVDNNGLSFG CVMEDTGITV TGEAPLMVDN 240 NKMVVLVNNI SIDQPVVAPH QWDFWTNKEH SMGDLVNENF EVQEDEDTNM DDNGFPFRCA 300 LEDTRITKTE EARMMADKNK MVLLENNTSN DRPAVAPHQR KLWTIEEHKS FLYGLEIYGR 360 GDWKNISKHF VTTKTPVQVS SHAQKFFKRI QKKASSGTKR YSINDVRLHD NELLAANNSS 420 VPRQALSFTG LNNDPSFRLQ APTSSLTVMN NQAQCSPSTY NQQVDQQPMW SEQQMMGSVA 480 AVMDGIGNYV PDGQQGPAYF YLGNV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020169909.1 | 0.0 | uncharacterized protein LOC109755402 | ||||
TrEMBL | R7WEJ4 | 0.0 | R7WEJ4_AEGTA; Myb-like protein J | ||||
STRING | EMT18945 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP842 | 30 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58900.1 | 3e-19 | Homeodomain-like transcriptional regulator |