PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT18523 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | ARR-B | ||||||||
Protein Properties | Length: 432aa MW: 48364.3 Da PI: 6.3658 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 33 | 1.4e-10 | 194 | 223 | 1 | 31 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPkt 31 kpr+ Wt +LH++F+ea++q+ G ++A+Pk+ EMT18523 194 KPRVTWTIKLHNKFLEAINQI-GLDRAVPKK 223 79*******************.*******97 PP | |||||||
2 | Response_reg | 75.5 | 2e-25 | 23 | 131 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH..HHHHESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealell..kekdpDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 +l+vdD+++ +++l+ +l++ +y + + ++d++ al++l ++++Dl+++D++mp+mdG++ll+ ir e +lp+i+++ ++ + + ++ Ga+ EMT18523 23 ILVVDDDRVCLKVLEALLRRCNY-QPTPVRDAKTALRMLmaGKQQFDLVITDVRMPDMDGFKLLELIRLEM-DLPVIMISVDCDKRVVMKGIDHGAS 117 89*********************.777899999999999555555**********************9976.************************* PP EEEESS--HHHHHH CS Response_reg 96 dflsKpfdpeelvk 109 df +Kp+ el + EMT18523 118 DFMVKPVCTHELKN 131 ******98888865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF52172 | 1.42E-33 | 19 | 141 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 1.2E-37 | 20 | 160 | No hit | No description |
SMART | SM00448 | 1.8E-29 | 21 | 133 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 40.245 | 22 | 137 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 1.3E-22 | 23 | 131 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 1.37E-26 | 24 | 136 | No hit | No description |
SuperFamily | SSF46689 | 1.33E-5 | 191 | 227 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.7E-9 | 191 | 223 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.8E-8 | 194 | 223 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 432 aa Download sequence Send to blast |
MGGDRRQMME DAAEDKFPEG LRILVVDDDR VCLKVLEALL RRCNYQPTPV RDAKTALRML 60 MAGKQQFDLV ITDVRMPDMD GFKLLELIRL EMDLPVIMIS VDCDKRVVMK GIDHGASDFM 120 VKPVCTHELK NIWQHVQRWR NPKAISHISD HDNDVQRVQP ATADKSKLSG HKRNAGDDSN 180 KHNESTSIST THRKPRVTWT IKLHNKFLEA INQIGLDRAV PKKKYRLHLK RVNSNPSGDA 240 HERWNSSYNM NNKGNFMHNH EHGRWGASSG DTASWSTNNY GAMGHLAPPM NTQSNFYMGA 300 EAPFISNTTS AGGFTEQMAP FNMASNTSSV GMMLNGSSAL DASRTSTKDT HVVNSERTTS 360 MLHNLQTDDF FSLTQLLDGG DGGSILPMQE GTLDQQPLND QLNEINAFSV DDIFSNMNLE 420 DFTGDDAIVE EA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3gt7_A | 3e-12 | 23 | 138 | 10 | 130 | Sensor protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}. | |||||
UniProt | Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HE996246 | 1e-158 | HE996246.1 Triticum aestivum cv. Arina SNP, chromosome 3B, clone Taes_arina_ctg_12224. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020198970.1 | 1e-134 | two-component response regulator ORR24-like | ||||
Swissprot | A2X1N2 | 9e-68 | ORR24_ORYSI; Two-component response regulator ORR24 | ||||
Swissprot | Q6H805 | 1e-67 | ORR24_ORYSJ; Two-component response regulator ORR24 | ||||
TrEMBL | R7WA95 | 0.0 | R7WA95_AEGTA; Two-component response regulator ARR12 | ||||
STRING | EMT18523 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15285 | 4 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31920.1 | 7e-62 | response regulator 10 |
Publications ? help Back to Top | |||
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